rhizobase » Rhizobium leguminosarum bv. viciae 3841 » genes » RL0102

GeneView: RL0102

GFF3

GeneAnnotation

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ID RL0102
Type protein_coding_gene
Gene symbol
goaG
Gene symbolExtracted from literature
gabT
Gene product

putative 4-aminobutyrate aminotransferase

Gene productExtracted from literature
Functional category Metabolism of small molecules
Gene Ontology
[IEA]
ipr2go
  • Biological Process: gamma-aminobutyric acid metabolic process (GO:0009448 External)
  • Molecular Function: 4-aminobutyrate transaminase activity (GO:0003867 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: pyridoxal phosphate binding (GO:0030170 External)
  • Molecular Function: transaminase activity (GO:0008483 External)

Genomic context

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Location Chr:130039..131319 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1281 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length426 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Leguminosarum:rl0102
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop rleg0:RL0102 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG RL0102 External -- Phylogenetic classification of ortholog.
  • MBGD rle:RL0102 External -- The automated construction of orthologous groups.
  • Gclust *RL0102* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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