rhizobase » Azospirillum sp. B510 » genes » AZL003120

GeneView: AZL003120

GFF3

GeneAnnotation

? | +/- | Top
ID AZL003120
Type protein_coding_gene
Gene symbol
lig
Gene symbolExtracted from literature
Gene product

DNA ligase (ATP)

Gene productExtracted from literature
Functional category Replication, recombination and repair
Gene Ontology
[IEA]
ipr2go

Genomic context

? | +/- | Top
Location Chr:359534..361135 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length1602 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length533 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Ib510:azl003120
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

RhizoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :AZL003120 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG AZL003120 External -- Phylogenetic classification of ortholog.
  • MBGD :AZL003120 External -- The automated construction of orthologous groups.
  • Gclust *AZL003120* External -- trans-kingdom classification of proteins.
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

Licence and disclaimer