rhizobase » Gluconacetobacter diazotrophicus PAl 5 » genes » GDI2078

GeneView: GDI2078

GFF3

GeneAnnotation

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ID GDI2078
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

putative virulence factor mviN

Gene productExtracted from literature
Functional category General function prediction only
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:2121343..2122941 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1599 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length532 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Gdia:gdi2078
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 10 32 22
36 58 22
99 121 22
136 158 22
167 189 22
195 216 21
256 278 22
281 303 22
322 344 22
363 385 22
390 412 22
416 437 21
456 478 22
494 516 22

Mutants

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Homology search results (Blast2)

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RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
  • GTop :GDI2078 External -- Genomes TO Protein structures and functions.
Ortholog/paralog cluster databases
  • COG GDI2078 External -- Phylogenetic classification of ortholog.
  • MBGD gdi:GDI2078 External -- The automated construction of orthologous groups.
  • Gclust *GDI2078* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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