rhizobase » Frankia sp. CcI3 » genes » Francci3_0181

GeneView: Francci3_0181

GFF3

GeneAnnotation

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ID Francci3_0181
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

glutamate decarboxylase

Gene productExtracted from literature
Functional category Amino acid transport and metabolism
Gene Ontology
[IEA]
ipr2go
  • Biological Process: carboxylic acid metabolic process (GO:0019752 External)
  • Biological Process: glutamate metabolic process (GO:0006536 External)
  • Molecular Function: carboxy-lyase activity (GO:0016831 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: glutamate decarboxylase activity (GO:0004351 External)
  • Molecular Function: pyridoxal phosphate binding (GO:0030170 External)

Genomic context

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Location Chr:212677..214077 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1401 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length466 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Francci3:francci3_0181
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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