rhizobase » Frankia alni ACN14a » genes » FRAAL0078

GeneView: FRAAL0078

GFF3

GeneAnnotation

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ID FRAAL0078
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
Gene product

aminotransferase AlaT

Gene productExtracted from literature
Functional category Amino acid transport and metabolism
Gene Ontology
[IEA]
ipr2go
  • Biological Process: biosynthetic process (GO:0009058 External)
  • Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity (GO:0016847 External)
  • Molecular Function: catalytic activity (GO:0003824 External)
  • Molecular Function: pyridoxal phosphate binding (GO:0030170 External)
  • Molecular Function: transferase activity, transferring nitrogenous groups (GO:0016769 External)

Genomic context

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Location Chr:81866..83080 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1215 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length404 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Fraal:fraal0078
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG FRAAL0078 External -- Phylogenetic classification of ortholog.
  • MBGD fal:FRAAL0078 External -- The automated construction of orthologous groups.
  • Gclust *FRAAL0078* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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