rhizobase » Rhizobium etli CFN42 » genes » RHE_PE00252

GeneView: RHE_PE00252

GFF3

GeneAnnotation

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ID RHE_PE00252
Type protein_coding_gene
Gene symbol
ligD
Gene symbolExtracted from literature
Gene product

ATP-dependent DNA ligase

Gene productExtracted from literature
Functional category Replication, recombination and repair
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location p42e:282101..284749 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length2649 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length882 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Etli:rhe_pe00252
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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RhizoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

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