rhizobase » Bradyrhizobium japonicum USDA110 » genes » blr2586

GeneView: blr2586

GFF3

GeneAnnotation

? | +/- | Top
ID blr2586
Type protein_coding_gene
Gene symbol
cbbS
Gene symbolExtracted from literature
cbbS
Gene product

ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit

Gene productExtracted from literature
Functional category Other
Gene Ontology
[IEA]
ipr2go
  • Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977 External)
  • Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984 External)

Genomic context

? | +/- | Top
Location Chr:2829776..2830180 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

? | +/- | Top
Nucleotide sequence
FNA
Length405 nt
Sequence retrieving

Peptide

? | +/- | Top
Translated sequence
FAA
Length134 AA.

Protein families, domains and functional sites

? | +/- | Top
Graphical view by InterProScan External
show/hide
PNG
Bradyrhizobium:blr2586
Table view by InterProScan External
show/hide
TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

? | +/- | Top

Homology search results (Blast2)

? | +/- | Top
show/hide TableView GFF3

RhizoBase Ortholog table (blast reciprocal best hit pairs)

? | +/- | Top
show/hide TableView GFF3

Geneset

? | +/- | Top

Variation

? | +/- | Top

References

? | +/- | Top

External links

? | +/- | Top
Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG blr2586 External -- Phylogenetic classification of ortholog.
  • MBGD bja:blr2586 External -- The automated construction of orthologous groups.
  • Gclust *blr2586* External -- trans-kingdom classification of proteins.
Phenotype database

API

? | +/- | Top
Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

RhizoBase

Kazusa DNA Research Institute

Licence and disclaimer