cyanobase » Synechocystis sp. PCC 6803 » genes » slr1311

GeneView: slr1311

GFF3

GeneAnnotation

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ID slr1311
Type protein_coding_gene
Gene symbol
psbA2
Gene symbolExtracted from literature
psbA2, psba-2, psbA, psbAII, slr1311
Gene product

photosystem II D1 protein

Gene productExtracted from literature
D1, PsbA, PsbA2
Functional category Photosystem II
Gene Ontology
[IEA]
ipr2go
  • Biological Process: photosynthesis, light reaction (GO:0019684 External)
  • Biological Process: photosynthetic electron transport in photosystem II (GO:0009772 External)
  • Cellular Component: light-harvesting complex (GO:0030076 External)
  • Cellular Component: membrane (GO:0016020 External)
  • Cellular Component: plasma membrane light-harvesting complex (GO:0030077 External)
  • Molecular Function: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (GO:0045156 External)

Genomic context

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Location Chr:7229..8311 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1083 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length360 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synechocystis:slr1311
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 34 56 22
68 90 22
109 131 22
141 163 22

Mutants

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Protein-Protein Interaction experiments

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Sato2007

PMID:18000013

Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG slr1311 External -- Phylogenetic classification of ortholog.
  • MBGD syn:slr1311 External -- The automated construction of orthologous groups.
  • Gclust *slr1311* External -- trans-kingdom classification of proteins.
Phenotype database
  • Fluorome slr1311 External -- The Cyanobacterial Chlorophyll Fluorescence Database.

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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