cyanobase » Synechocystis sp. PCC 6803 » genes » sll1578

GeneView: sll1578

GFF3

GeneAnnotation

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ID sll1578
Type protein_coding_gene
Gene symbol
cpcA
Gene symbolExtracted from literature
cpcA, sll1578
Gene product

phycocyanin alpha subunit

Gene productExtracted from literature
phycocyanin α subunit, αPC, CpcA
Functional category Phycobilisome
Gene Ontology
[IEA]
ipr2go

Genomic context

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Location Chr:726349..726837 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length489 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length162 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synechocystis:sll1578
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Protein-Protein Interaction experiments

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Sato2007

PMID:18000013

Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG sll1578 External -- Phylogenetic classification of ortholog.
  • MBGD syn:sll1578 External -- The automated construction of orthologous groups.
  • Gclust *sll1578* External -- trans-kingdom classification of proteins.
Phenotype database
  • Fluorome sll1578 External -- The Cyanobacterial Chlorophyll Fluorescence Database.

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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