cyanobase » Synechococcus elongatus PCC 7942 » genes » Synpcc7942_B2620

GeneView: Synpcc7942_B2620

GFF3

GeneAnnotation

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ID Synpcc7942_B2620
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
srpA
Gene product

putative catalase

Gene productExtracted from literature
Functional category Not in COGs
Gene Ontology
[IEA]
ipr2go
  • Biological Process: oxidation reduction (GO:0055114 External)
  • Biological Process: response to oxidative stress (GO:0006979 External)
  • Molecular Function: catalase activity (GO:0004096 External)

Genomic context

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Location plasmid_1:11202..12299 External
Strand direct
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length1098 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length365 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Synpcc7942:synpcc7942_b2620
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
 FromToLength(A.A.)
Transmembrane segments 1 21 20
37 59 22

Mutants

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Homology search results (Blast2)

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CyanoBase Ortholog table (blast reciprocal best hit pairs)

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Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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