cyanobase » Rhodopseudomonas palustris CGA009 » genes » RPA3525

GeneView: RPA3525

GFF3

GeneAnnotation

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ID RPA3525
Type protein_coding_gene
Gene symbol
ddlA
Gene symbolExtracted from literature
Gene product

putative D-alanyl-D-alanine ligase A

Gene productExtracted from literature
Functional category Cell Envelope Biogenesis, Outer Membrane
Gene Ontology
[IEA]
ipr2go
  • Biological Process: peptidoglycan biosynthetic process (GO:0009252 External)
  • Cellular Component: cell wall (GO:0005618 External)
  • Molecular Function: ATP binding (GO:0005524 External)
  • Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716 External)
  • Molecular Function: catalytic activity (GO:0003824 External)

Genomic context

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Location Chr:3985840..3986829 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length990 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length329 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Rhodopseudomonas:rpa3525
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG RPA3525 External -- Phylogenetic classification of ortholog.
  • MBGD rpa:RPA3525 External -- The automated construction of orthologous groups.
  • Gclust *RPA3525* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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