cyanobase » Nostoc punctiforme ATCC 29133

Nostoc punctiforme ATCC 29133

Summary

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Data source name NPUN
Full name Nostoc punctiforme ATCC 29133 External
Taxonomy Lineage Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc

Genome Information

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Chromosomes
Name Size (bp) Genes
Npun-chr-chr Chromosome 8,234,322 6,191
Npun-pnpun01-pnpun01 pNPUN01 354,564 260
Npun-pnpun02-pnpun02 pNPUN02 254,918 197
Npun-pnpun03-pnpun03 pNPUN03 123,028 73
Npun-pnpun04-pnpun04 pNPUN04 65,940 48
Npun-pnpun05-pnpun05 pNPUN05 26,419 25
Total 9,059,191 6,794
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

200px-npun

Tools and analysis

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BLAST2
KazusaMart Dataset NPUN

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: 63737 External
KEGG GENOME npu External
UniProt taxonomy:63737 in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/NPUN/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/NPUN/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/NPUN/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/NPUN/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/NPUN/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/NPUN/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/NPUN/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/NPUN/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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