cyanobase » Prochlorococcus marinus MIT9313 » genes » PMT0340

GeneView: PMT0340

GFF3

GeneAnnotation

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ID PMT0340
Type protein_coding_gene
Gene symbol
Gene symbolExtracted from literature
sodN
Gene product

putative nickel-containing superoxide dismutase precursor (NISOD)

Gene productExtracted from literature
Functional category Hydrogenase
Gene Ontology
[IEA]
ipr2go
  • Molecular Function: antioxidant activity (GO:0016209 External)
  • Molecular Function: nickel ion binding (GO:0016151 External)
  • Molecular Function: superoxide dismutase activity (GO:0004784 External)

Genomic context

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Location Chr:386318..386791 External
Strand complement
Genomic context

GenomeView External

GenomeView (old) External

Transcript

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Nucleotide sequence
FNA
Length474 nt
Sequence retrieving

Peptide

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Translated sequence
FAA
Length157 AA.

Protein families, domains and functional sites

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Graphical view by InterProScan External
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PNG
Mit9313:pmt0340
Table view by InterProScan External
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TableView
GFF3
Transmembrane regions predicted by SOSUI
Not detected.

Mutants

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Homology search results (Blast2)

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show/hide TableView GFF3

CyanoBase Ortholog table (blast reciprocal best hit pairs)

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show/hide TableView GFF3

Geneset

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Variation

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References

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External links

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Sequence databases
Gene annotation databases
Protein databases
3D structure databases
Ortholog/paralog cluster databases
  • COG PMT0340 External -- Phylogenetic classification of ortholog.
  • MBGD pmt:PMT0340 External -- The automated construction of orthologous groups.
  • Gclust *PMT0340* External -- trans-kingdom classification of proteins.
Phenotype database

API

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Permlinks
Homology: Blast hits
Orthologs: Blast hit ortholog pairs
InterProScan matches

CyanoBase

Kazusa DNA Research Institute

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