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cyanobase » Mastigocoleus testarum BC008

Mastigocoleus testarum BC008

Summary

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Data source name GCA_001456025.1
Full name Mastigocoleus testarum BC008 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Mastigocoleus.

Genome Information

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Chromosomes
Name Size (bp) Genes
LMTZ01000001 312,094 208
LMTZ01000085 302,545 202
LMTZ01000096 299,865 223
LMTZ01000107 271,577 188
LMTZ01000118 248,175 194
LMTZ01000129 247,656 194
LMTZ01000140 233,534 164
LMTZ01000151 230,560 167
LMTZ01000162 211,693 145
LMTZ01000002 198,929 139
LMTZ01000013 193,396 141
LMTZ01000024 185,496 113
LMTZ01000035 179,180 126
LMTZ01000045 175,538 122
LMTZ01000055 169,573 95
LMTZ01000066 166,087 117
LMTZ01000077 166,056 121
LMTZ01000083 165,914 118
LMTZ01000084 160,973 115
LMTZ01000086 160,402 118
LMTZ01000087 159,741 107
LMTZ01000088 145,891 112
LMTZ01000089 145,461 114
LMTZ01000090 143,221 98
LMTZ01000091 142,724 103
LMTZ01000092 142,002 97
LMTZ01000093 141,157 96
LMTZ01000094 130,364 96
LMTZ01000095 127,918 103
LMTZ01000097 127,715 103
LMTZ01000098 127,093 105
LMTZ01000099 121,716 94
LMTZ01000100 121,667 88
LMTZ01000101 116,946 74
LMTZ01000102 112,069 77
LMTZ01000103 109,642 74
LMTZ01000104 108,274 67
LMTZ01000105 105,842 71
LMTZ01000106 104,117 72
LMTZ01000108 100,843 70
LMTZ01000109 99,730 69
LMTZ01000110 99,202 71
LMTZ01000111 98,881 59
LMTZ01000112 93,105 65
LMTZ01000113 89,626 55
LMTZ01000114 88,671 67
LMTZ01000115 88,623 65
LMTZ01000116 88,002 61
LMTZ01000117 86,786 60
LMTZ01000119 84,526 62
LMTZ01000120 84,452 53
LMTZ01000121 83,249 56
LMTZ01000122 83,184 49
LMTZ01000123 81,883 56
LMTZ01000124 81,844 56
LMTZ01000125 79,616 62
LMTZ01000126 78,599 51
LMTZ01000127 77,510 56
LMTZ01000128 76,566 46
LMTZ01000130 75,764 51
LMTZ01000131 74,376 48
LMTZ01000132 73,860 50
LMTZ01000133 73,108 53
LMTZ01000134 73,077 50
LMTZ01000135 72,699 52
LMTZ01000136 69,514 48
LMTZ01000137 68,866 82
LMTZ01000138 67,817 43
LMTZ01000139 67,060 54
LMTZ01000141 66,159 49
LMTZ01000142 66,017 49
LMTZ01000143 65,968 39
LMTZ01000144 65,886 44
LMTZ01000145 65,706 47
LMTZ01000146 65,507 47
LMTZ01000147 65,180 47
LMTZ01000148 64,686 57
LMTZ01000149 64,375 57
LMTZ01000150 63,563 47
LMTZ01000152 61,996 39
LMTZ01000153 61,954 39
LMTZ01000154 58,927 42
LMTZ01000155 58,780 40
LMTZ01000156 58,211 39
LMTZ01000157 57,869 45
LMTZ01000158 57,509 34
LMTZ01000159 57,055 42
LMTZ01000160 56,852 35
LMTZ01000161 54,706 43
LMTZ01000163 50,844 32
LMTZ01000164 50,035 30
LMTZ01000165 49,179 32
LMTZ01000166 46,849 51
LMTZ01000167 46,367 40
LMTZ01000168 46,271 35
LMTZ01000169 45,155 41
LMTZ01000170 45,136 27
LMTZ01000171 43,662 32
LMTZ01000172 43,134 30
LMTZ01000003 42,867 34
LMTZ01000004 42,573 31
LMTZ01000005 42,407 32
LMTZ01000006 40,205 23
LMTZ01000007 40,145 27
LMTZ01000008 40,001 38
LMTZ01000009 39,757 31
LMTZ01000010 39,345 30
LMTZ01000011 38,976 22
LMTZ01000012 38,523 34
LMTZ01000014 37,313 35
LMTZ01000015 37,254 36
LMTZ01000016 36,091 21
LMTZ01000017 34,999 19
LMTZ01000018 34,982 21
LMTZ01000019 34,592 27
LMTZ01000020 32,444 22
LMTZ01000021 32,229 20
LMTZ01000022 32,042 27
LMTZ01000023 31,832 20
LMTZ01000025 30,971 25
LMTZ01000026 30,885 27
LMTZ01000027 30,573 26
LMTZ01000028 30,315 19
LMTZ01000029 30,237 20
LMTZ01000030 30,191 19
LMTZ01000031 29,716 19
LMTZ01000032 29,141 22
LMTZ01000033 28,871 20
LMTZ01000034 28,827 20
LMTZ01000036 28,770 21
LMTZ01000037 28,429 21
LMTZ01000038 27,991 20
LMTZ01000039 26,609 22
LMTZ01000040 26,288 24
LMTZ01000041 25,739 16
LMTZ01000042 24,603 19
LMTZ01000043 21,840 20
LMTZ01000044 21,441 19
LMTZ01000046 20,768 13
LMTZ01000047 20,414 11
LMTZ01000048 19,919 12
LMTZ01000049 19,584 12
LMTZ01000050 19,419 13
LMTZ01000051 19,352 13
LMTZ01000052 19,228 14
LMTZ01000053 19,176 14
LMTZ01000054 19,023 16
LMTZ01000056 18,972 15
LMTZ01000057 18,926 15
LMTZ01000058 18,349 8
LMTZ01000059 18,007 16
LMTZ01000060 17,689 12
LMTZ01000061 17,087 17
LMTZ01000062 16,888 16
LMTZ01000063 16,151 17
LMTZ01000064 15,973 10
LMTZ01000065 15,707 12
LMTZ01000067 15,595 13
LMTZ01000068 15,490 13
LMTZ01000069 15,228 10
LMTZ01000070 13,747 8
LMTZ01000071 13,422 13
LMTZ01000072 12,748 11
LMTZ01000073 12,712 11
LMTZ01000074 12,623 6
LMTZ01000075 12,125 13
LMTZ01000076 12,099 10
LMTZ01000078 11,647 7
LMTZ01000079 11,633 7
LMTZ01000080 11,430 7
LMTZ01000081 10,882 11
LMTZ01000082 10,832 11
Total 12,700,239 9,068
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001456025.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001456025.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001456025.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001456025.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001456025.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001456025.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001456025.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001456025.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001456025.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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