cyanobase » Phormidium sp. OSCR

Phormidium sp. OSCR

Summary

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Data source name GCA_001314905.1
Full name Phormidium sp. OSCR External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Phormidium.

Genome Information

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Chromosomes
Name Size (bp) Genes
LJZT01000001 149,954 135
LJZT01000002 136,990 110
LJZT01000003 125,405 114
LJZT01000004 85,965 99
LJZT01000005 85,177 78
LJZT01000006 82,355 79
LJZT01000007 81,452 78
LJZT01000008 77,522 63
LJZT01000009 76,627 65
LJZT01000010 75,200 56
LJZT01000011 72,913 55
LJZT01000012 70,752 64
LJZT01000013 59,923 53
LJZT01000014 58,944 43
LJZT01000015 56,494 55
LJZT01000016 55,198 53
LJZT01000017 54,086 50
LJZT01000018 53,091 49
LJZT01000019 52,574 58
LJZT01000020 50,929 51
LJZT01000021 50,874 47
LJZT01000022 49,210 37
LJZT01000023 46,702 29
LJZT01000024 46,174 48
LJZT01000025 45,868 40
LJZT01000026 45,199 35
LJZT01000027 44,459 46
LJZT01000028 44,354 42
LJZT01000029 44,270 35
LJZT01000030 43,762 43
LJZT01000031 43,695 32
LJZT01000032 42,031 38
LJZT01000033 40,288 39
LJZT01000034 40,286 30
LJZT01000035 39,223 38
LJZT01000036 38,603 30
LJZT01000037 38,003 33
LJZT01000038 37,876 23
LJZT01000039 37,650 37
LJZT01000040 36,772 37
LJZT01000041 36,640 31
LJZT01000042 35,992 23
LJZT01000043 34,998 31
LJZT01000044 34,536 35
LJZT01000045 33,809 33
LJZT01000046 32,703 26
LJZT01000047 31,404 32
LJZT01000048 30,848 30
LJZT01000049 30,094 26
LJZT01000050 29,806 25
LJZT01000051 29,362 20
LJZT01000052 29,087 22
LJZT01000053 28,581 25
LJZT01000054 28,577 29
LJZT01000055 28,298 27
LJZT01000056 28,282 28
LJZT01000057 27,570 20
LJZT01000058 27,496 23
LJZT01000059 27,108 21
LJZT01000060 26,114 26
LJZT01000061 26,002 21
LJZT01000062 25,906 20
LJZT01000063 25,398 22
LJZT01000064 25,340 28
LJZT01000065 24,831 17
LJZT01000066 24,108 18
LJZT01000067 23,887 22
LJZT01000068 23,852 28
LJZT01000069 23,408 24
LJZT01000070 23,335 22
LJZT01000071 23,094 17
LJZT01000072 22,839 18
LJZT01000073 22,795 24
LJZT01000074 22,606 22
LJZT01000075 21,905 20
LJZT01000076 21,611 25
LJZT01000077 21,538 21
LJZT01000078 21,167 18
LJZT01000079 20,901 14
LJZT01000080 20,890 19
LJZT01000081 20,715 27
LJZT01000082 20,654 20
LJZT01000083 20,618 17
LJZT01000084 20,432 17
LJZT01000085 19,997 18
LJZT01000086 19,991 16
LJZT01000087 19,935 16
LJZT01000088 19,783 14
LJZT01000089 19,540 18
LJZT01000090 19,472 23
LJZT01000091 19,468 17
LJZT01000092 19,164 16
LJZT01000093 19,004 19
LJZT01000094 18,772 15
LJZT01000095 18,718 25
LJZT01000096 18,572 15
LJZT01000097 18,324 14
LJZT01000098 18,087 20
LJZT01000099 18,052 14
LJZT01000100 17,947 17
LJZT01000101 17,782 16
LJZT01000102 17,447 17
LJZT01000103 17,209 21
LJZT01000104 16,727 11
LJZT01000105 16,650 16
LJZT01000106 16,626 14
LJZT01000107 15,884 15
LJZT01000108 15,515 13
LJZT01000109 15,451 14
LJZT01000110 15,319 9
LJZT01000111 14,736 16
LJZT01000112 14,692 8
LJZT01000113 14,612 12
LJZT01000114 14,600 13
LJZT01000115 14,539 8
LJZT01000116 14,116 17
LJZT01000117 14,027 11
LJZT01000118 13,865 12
LJZT01000119 13,572 11
LJZT01000120 12,938 12
LJZT01000121 12,790 9
LJZT01000122 12,746 18
LJZT01000123 12,733 10
LJZT01000124 12,537 15
LJZT01000125 12,318 10
LJZT01000126 11,688 16
LJZT01000127 11,586 8
LJZT01000128 11,167 8
LJZT01000129 11,157 12
LJZT01000130 10,954 4
LJZT01000131 10,947 16
LJZT01000132 10,910 9
LJZT01000133 10,762 12
LJZT01000134 10,716 7
LJZT01000135 10,531 9
LJZT01000136 10,460 10
LJZT01000137 10,453 6
LJZT01000138 10,415 6
LJZT01000139 10,006 9
LJZT01000140 9,994 8
LJZT01000141 9,654 9
LJZT01000142 9,636 9
LJZT01000143 9,601 6
LJZT01000144 9,504 8
LJZT01000145 9,465 11
LJZT01000146 9,087 15
LJZT01000147 9,060 9
LJZT01000148 8,716 8
LJZT01000149 8,205 7
LJZT01000150 8,109 10
LJZT01000151 7,378 6
LJZT01000152 7,229 10
LJZT01000153 7,175 7
LJZT01000154 7,155 7
LJZT01000155 6,944 7
LJZT01000156 6,929 5
LJZT01000157 6,884 5
LJZT01000158 6,864 3
LJZT01000159 6,828 6
LJZT01000160 6,558 7
LJZT01000161 6,545 8
LJZT01000162 6,219 8
LJZT01000163 5,940 6
LJZT01000164 5,812 6
LJZT01000165 5,797 6
LJZT01000166 5,598 6
LJZT01000167 5,409 5
LJZT01000168 5,388 2
LJZT01000169 5,333 6
LJZT01000170 5,241 5
LJZT01000171 5,205 4
LJZT01000172 5,194 7
LJZT01000173 5,040 7
LJZT01000174 5,033 5
LJZT01000175 5,031 4
LJZT01000176 4,713 4
LJZT01000177 4,311 6
LJZT01000178 3,811 5
LJZT01000179 3,755 7
LJZT01000180 3,420 4
LJZT01000181 3,145 3
LJZT01000182 3,072 2
LJZT01000183 2,910 3
LJZT01000184 2,567 5
LJZT01000185 2,515 4
LJZT01000186 2,479 1
LJZT01000187 2,408 2
Total 4,694,862 4,212
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001314905.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001314905.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001314905.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001314905.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001314905.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001314905.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001314905.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001314905.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001314905.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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