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cyanobase » Phormidesmis priestleyi Ana

Phormidesmis priestleyi Ana

Summary

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Data source name GCA_001314865.1
Full name Phormidesmis priestleyi Ana
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Phormidesmis.

Genome Information

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Chromosomes
Name Size (bp) Genes
LJZR01000001 423,717 347
LJZR01000002 317,104 262
LJZR01000003 289,495 244
LJZR01000004 230,320 176
LJZR01000005 224,161 125
LJZR01000006 198,983 160
LJZR01000007 192,262 155
LJZR01000008 191,790 158
LJZR01000009 169,757 140
LJZR01000010 163,372 163
LJZR01000011 157,555 133
LJZR01000012 156,222 133
LJZR01000013 151,173 126
LJZR01000014 147,420 126
LJZR01000015 130,446 107
LJZR01000016 127,988 102
LJZR01000017 115,298 96
LJZR01000018 106,222 99
LJZR01000019 104,252 91
LJZR01000020 103,409 84
LJZR01000021 96,252 83
LJZR01000022 84,815 68
LJZR01000023 82,153 72
LJZR01000024 78,580 64
LJZR01000025 78,259 56
LJZR01000026 75,877 55
LJZR01000027 75,259 65
LJZR01000028 72,745 59
LJZR01000029 72,595 61
LJZR01000030 69,606 33
LJZR01000031 47,756 44
LJZR01000032 46,948 43
LJZR01000033 46,235 39
LJZR01000034 43,206 29
LJZR01000035 42,500 32
LJZR01000036 39,164 26
LJZR01000037 37,992 31
LJZR01000038 36,216 37
LJZR01000039 35,382 28
LJZR01000040 33,155 32
LJZR01000041 31,859 23
LJZR01000042 31,091 18
LJZR01000043 28,918 31
LJZR01000044 28,599 22
LJZR01000045 27,527 27
LJZR01000046 25,608 16
LJZR01000047 24,391 21
LJZR01000048 24,013 21
LJZR01000049 23,571 20
LJZR01000050 23,334 18
LJZR01000051 21,982 15
LJZR01000052 21,854 15
LJZR01000053 21,544 20
LJZR01000054 20,004 7
LJZR01000055 19,022 16
LJZR01000056 18,329 13
LJZR01000057 18,224 17
LJZR01000058 17,852 16
LJZR01000059 17,675 13
LJZR01000060 16,642 12
LJZR01000061 16,616 12
LJZR01000062 15,791 12
LJZR01000063 15,528 19
LJZR01000064 15,147 11
LJZR01000065 14,236 17
LJZR01000066 14,151 13
LJZR01000067 13,723 12
LJZR01000068 12,959 15
LJZR01000069 12,773 9
LJZR01000070 12,338 13
LJZR01000071 11,915 13
LJZR01000072 11,751 10
LJZR01000073 11,747 7
LJZR01000074 11,687 5
LJZR01000075 11,222 13
LJZR01000076 11,118 14
LJZR01000077 10,919 8
LJZR01000078 10,498 10
LJZR01000079 10,397 10
LJZR01000080 10,335 6
LJZR01000081 10,222 14
LJZR01000082 10,002 3
LJZR01000083 9,202 8
LJZR01000084 8,948 7
LJZR01000085 8,792 9
LJZR01000086 8,599 5
LJZR01000087 8,523 10
LJZR01000088 8,519 8
LJZR01000089 8,499 9
LJZR01000090 8,402 9
LJZR01000091 8,126 6
LJZR01000092 8,054 7
LJZR01000093 7,300 5
LJZR01000094 7,053 4
LJZR01000095 6,714 13
LJZR01000096 6,507 7
LJZR01000097 6,438 8
LJZR01000098 6,409 7
LJZR01000099 6,211 3
LJZR01000100 6,015 10
LJZR01000101 5,974 9
LJZR01000102 5,880 5
LJZR01000103 5,861 8
LJZR01000104 5,844 5
LJZR01000105 5,808 6
LJZR01000106 5,806 3
LJZR01000107 5,737 8
LJZR01000108 5,617 4
LJZR01000109 5,593 7
LJZR01000110 5,409 9
LJZR01000111 5,399 8
LJZR01000112 5,397 7
LJZR01000113 5,378 6
LJZR01000114 5,327 8
LJZR01000115 5,281 7
LJZR01000116 5,247 4
LJZR01000117 5,148 5
LJZR01000118 4,817 5
LJZR01000119 4,323 7
LJZR01000120 4,287 7
LJZR01000121 4,061 4
LJZR01000122 4,033 3
LJZR01000123 3,927 4
LJZR01000124 3,756 3
LJZR01000125 3,734 5
LJZR01000126 3,404 4
LJZR01000127 3,269 5
LJZR01000128 3,058 2
LJZR01000129 2,957 2
LJZR01000130 2,742 5
LJZR01000131 2,732 2
LJZR01000132 2,662 2
LJZR01000133 2,371 2
LJZR01000134 2,279 2
LJZR01000135 2,103 3
LJZR01000136 2,070 3
Total 5,928,357 4,905
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_001314865.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_001314865.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_001314865.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_001314865.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001314865.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001314865.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001314865.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001314865.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001314865.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001314865.1/genes/interpro.txt (File format)

MicrobeBase