cyanobase » Planktothricoides sp. SR001

Planktothricoides sp. SR001

Summary

? | +/- | Top
Data source name GCA_001276715.1
Full name Planktothricoides sp. SR001 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Planktothricoides.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
LIUQ01000001 297,434 209
LIUQ01000002 281,363 208
LIUQ01000003 271,380 188
LIUQ01000004 253,789 175
LIUQ01000005 217,907 138
LIUQ01000006 196,555 152
LIUQ01000007 162,926 116
LIUQ01000008 158,322 122
LIUQ01000009 152,137 93
LIUQ01000010 150,765 113
LIUQ01000011 140,190 89
LIUQ01000012 137,681 104
LIUQ01000013 131,064 97
LIUQ01000014 128,699 87
LIUQ01000015 123,385 120
LIUQ01000016 120,115 84
LIUQ01000017 119,236 98
LIUQ01000018 118,302 93
LIUQ01000019 114,658 80
LIUQ01000020 110,121 68
LIUQ01000021 109,720 87
LIUQ01000022 108,940 67
LIUQ01000023 99,860 81
LIUQ01000024 96,769 61
LIUQ01000025 92,990 61
LIUQ01000026 92,894 60
LIUQ01000027 91,845 74
LIUQ01000028 90,070 67
LIUQ01000029 86,506 63
LIUQ01000030 81,723 58
LIUQ01000031 79,803 47
LIUQ01000032 79,540 55
LIUQ01000033 74,449 57
LIUQ01000034 74,255 53
LIUQ01000035 74,033 47
LIUQ01000036 72,657 49
LIUQ01000037 67,080 56
LIUQ01000038 66,571 61
LIUQ01000039 65,260 55
LIUQ01000040 64,045 37
LIUQ01000041 63,211 41
LIUQ01000042 60,938 52
LIUQ01000043 60,295 45
LIUQ01000044 56,216 33
LIUQ01000045 55,977 35
LIUQ01000046 55,141 43
LIUQ01000047 54,463 32
LIUQ01000048 51,964 36
LIUQ01000049 49,077 27
LIUQ01000050 47,426 35
LIUQ01000051 46,879 36
LIUQ01000052 44,097 33
LIUQ01000053 44,051 30
LIUQ01000054 43,736 30
LIUQ01000055 43,197 32
LIUQ01000056 42,158 45
LIUQ01000057 41,342 20
LIUQ01000058 41,126 32
LIUQ01000059 40,298 27
LIUQ01000060 39,802 22
LIUQ01000061 38,362 33
LIUQ01000062 35,871 24
LIUQ01000063 31,069 28
LIUQ01000064 31,025 22
LIUQ01000065 29,743 23
LIUQ01000066 29,219 24
LIUQ01000067 29,097 24
LIUQ01000068 28,602 17
LIUQ01000069 27,427 22
LIUQ01000070 26,879 26
LIUQ01000071 25,797 11
LIUQ01000072 25,792 22
LIUQ01000073 25,457 13
LIUQ01000074 24,716 21
LIUQ01000075 24,469 13
LIUQ01000076 24,289 20
LIUQ01000077 23,599 25
LIUQ01000078 23,103 14
LIUQ01000079 22,980 20
LIUQ01000080 22,531 25
LIUQ01000081 20,644 16
LIUQ01000082 20,012 16
LIUQ01000083 19,684 9
LIUQ01000084 19,352 15
LIUQ01000085 17,821 8
LIUQ01000086 16,133 11
LIUQ01000087 15,540 14
LIUQ01000088 14,505 8
LIUQ01000089 13,477 15
LIUQ01000090 13,347 9
LIUQ01000091 12,468 9
LIUQ01000092 11,652 8
LIUQ01000093 11,622 6
LIUQ01000094 11,502 6
LIUQ01000095 11,131 5
LIUQ01000096 10,384 4
LIUQ01000097 10,167 8
LIUQ01000098 10,049 8
LIUQ01000099 9,855 4
LIUQ01000100 9,417 9
LIUQ01000101 9,215 9
LIUQ01000102 8,265 7
LIUQ01000103 7,511 2
LIUQ01000104 7,457 7
LIUQ01000105 7,398 8
LIUQ01000106 6,354 5
LIUQ01000107 6,324 5
LIUQ01000108 5,611 4
LIUQ01000109 5,591 5
LIUQ01000110 5,513 7
LIUQ01000111 5,305 7
LIUQ01000112 5,283 3
LIUQ01000113 5,157 5
LIUQ01000114 4,686 4
LIUQ01000115 4,523 5
LIUQ01000116 4,503 2
LIUQ01000117 4,480 1
LIUQ01000118 4,277 2
LIUQ01000119 3,758 4
LIUQ01000120 3,661 2
LIUQ01000121 3,458 6
LIUQ01000122 3,329 4
LIUQ01000123 3,240 2
LIUQ01000124 3,100 1
LIUQ01000125 3,028 3
LIUQ01000127 2,816 4
LIUQ01000128 2,767 2
LIUQ01000126 2,747 1
LIUQ01000129 2,607 3
LIUQ01000130 2,565 1
LIUQ01000131 2,505 2
LIUQ01000132 2,481 1
LIUQ01000133 2,436 1
LIUQ01000134 2,414 0
LIUQ01000135 2,389 5
LIUQ01000136 2,313 0
LIUQ01000137 2,205 0
LIUQ01000138 2,020 1
LIUQ01000139 2,000 4
LIUQ01000140 1,948 2
LIUQ01000141 1,829 1
LIUQ01000142 1,807 1
LIUQ01000143 1,774 2
LIUQ01000144 1,692 0
LIUQ01000145 1,662 4
LIUQ01000146 1,646 3
LIUQ01000147 1,627 1
LIUQ01000148 1,458 2
LIUQ01000149 1,383 1
LIUQ01000150 1,365 2
LIUQ01000151 1,284 0
LIUQ01000152 1,282 1
LIUQ01000153 1,282 2
LIUQ01000154 1,252 1
LIUQ01000155 1,241 2
LIUQ01000156 1,238 1
LIUQ01000157 1,222 1
LIUQ01000158 1,220 1
LIUQ01000159 1,212 1
LIUQ01000160 1,206 2
LIUQ01000161 1,190 1
LIUQ01000162 1,163 0
LIUQ01000163 1,105 1
LIUQ01000164 1,086 0
LIUQ01000165 1,017 1
Total 7,066,705 5,100
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2
KazusaMart Dataset GCA_001276715.1

Genome-scale data

? | +/- | Top
Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

? | +/- | Top
References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

? | +/- | Top
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001276715.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001276715.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001276715.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001276715.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001276715.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001276715.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001276715.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001276715.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

Licence and disclaimer