cyanobase » Hapalosiphon sp. MRB220

Hapalosiphon sp. MRB220

Summary

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Data source name GCA_001275395.1
Full name Hapalosiphon sp. MRB220 External
Taxonomy Lineage Cyanobacteria; Stigonematales; Hapalosiphon.

Genome Information

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Chromosomes
Name Size (bp) Genes
LIRN01000072 810,851 660
LIRN01000023 477,470 390
LIRN01000064 454,803 371
LIRN01000071 268,006 220
LIRN01000018 244,786 190
LIRN01000031 239,288 157
LIRN01000082 232,792 186
LIRN01000004 224,059 162
LIRN01000069 214,461 175
LIRN01000077 200,621 154
LIRN01000111 197,048 174
LIRN01000088 190,527 169
LIRN01000073 184,975 160
LIRN01000106 178,679 153
LIRN01000009 160,697 117
LIRN01000090 158,734 110
LIRN01000001 145,232 115
LIRN01000080 138,930 124
LIRN01000083 138,702 114
LIRN01000074 120,911 70
LIRN01000085 91,862 70
LIRN01000011 91,582 57
LIRN01000094 87,496 69
LIRN01000091 81,756 77
LIRN01000050 79,504 67
LIRN01000048 74,119 54
LIRN01000013 72,120 59
LIRN01000002 68,112 62
LIRN01000015 61,656 50
LIRN01000101 60,362 55
LIRN01000014 57,710 52
LIRN01000097 56,676 56
LIRN01000089 54,261 44
LIRN01000105 53,509 38
LIRN01000084 53,336 27
LIRN01000026 52,145 26
LIRN01000007 51,981 53
LIRN01000010 49,849 38
LIRN01000012 49,709 32
LIRN01000008 48,905 42
LIRN01000037 48,632 33
LIRN01000098 47,219 37
LIRN01000095 46,268 34
LIRN01000112 44,853 57
LIRN01000102 43,430 35
LIRN01000079 41,373 32
LIRN01000052 40,738 32
LIRN01000058 39,334 29
LIRN01000078 38,554 23
LIRN01000028 33,191 19
LIRN01000108 33,121 22
LIRN01000029 32,545 18
LIRN01000020 30,861 13
LIRN01000113 29,299 21
LIRN01000099 29,282 21
LIRN01000086 25,353 20
LIRN01000081 24,685 18
LIRN01000042 23,654 19
LIRN01000003 22,907 18
LIRN01000100 22,835 18
LIRN01000044 21,569 10
LIRN01000033 21,473 18
LIRN01000006 21,394 13
LIRN01000036 20,337 16
LIRN01000104 19,572 19
LIRN01000049 19,145 13
LIRN01000096 16,367 8
LIRN01000109 15,034 11
LIRN01000051 14,683 13
LIRN01000022 14,538 14
LIRN01000075 13,239 12
LIRN01000115 13,176 9
LIRN01000055 12,786 14
LIRN01000016 12,746 10
LIRN01000056 12,036 13
LIRN01000061 11,684 9
LIRN01000017 11,500 8
LIRN01000024 11,333 6
LIRN01000087 11,215 13
LIRN01000005 10,653 3
LIRN01000107 10,337 9
LIRN01000103 10,334 8
LIRN01000040 10,089 11
LIRN01000092 9,680 15
LIRN01000034 9,526 7
LIRN01000025 9,187 10
LIRN01000047 8,251 6
LIRN01000041 7,664 6
LIRN01000043 6,025 4
LIRN01000093 5,968 8
LIRN01000030 5,879 8
LIRN01000053 4,954 5
LIRN01000019 4,695 2
LIRN01000045 4,058 2
LIRN01000062 2,993 0
LIRN01000021 2,906 3
LIRN01000039 2,826 2
LIRN01000057 2,726 4
LIRN01000035 2,634 2
LIRN01000110 2,532 1
LIRN01000046 2,482 4
LIRN01000032 2,442 3
LIRN01000038 2,404 2
LIRN01000114 2,351 1
LIRN01000060 2,087 1
LIRN01000067 1,703 1
LIRN01000059 1,692 0
LIRN01000066 1,582 3
LIRN01000054 1,489 1
LIRN01000063 1,449 2
LIRN01000070 1,294 1
LIRN01000027 1,293 1
LIRN01000068 1,239 2
LIRN01000076 1,058 2
LIRN01000065 1,055 1
Total 7,429,720 5,888
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001275395.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001275395.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001275395.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001275395.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001275395.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001275395.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001275395.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001275395.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001275395.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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