cyanobase » Prochlorococcus marinus

Prochlorococcus marinus

Summary

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Data source name GCA_001180325.1
Full name Prochlorococcus marinus External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CVSZ01000035 389,688 0
CVSZ01000071 139,349 0
CVSZ01000016 113,888 0
CVSZ01000020 111,624 0
CVSZ01000079 90,597 0
CVSZ01000061 87,220 0
CVSZ01000037 78,720 0
CVSZ01000003 66,939 0
CVSZ01000074 54,229 0
CVSZ01000054 49,004 0
CVSZ01000076 44,981 0
CVSZ01000006 40,402 0
CVSZ01000042 34,377 0
CVSZ01000009 33,425 0
CVSZ01000011 29,282 0
CVSZ01000008 14,599 0
CVSZ01000060 6,835 0
CVSZ01000012 6,554 0
CVSZ01000058 5,444 0
CVSZ01000028 4,406 0
CVSZ01000072 3,916 0
CVSZ01000023 3,159 0
CVSZ01000045 2,034 0
CVSZ01000010 1,598 0
CVSZ01000059 1,584 0
CVSZ01000063 1,515 0
CVSZ01000038 1,502 0
CVSZ01000005 1,326 0
CVSZ01000007 1,031 0
CVSZ01000018 932 0
CVSZ01000004 884 0
CVSZ01000041 843 0
CVSZ01000075 824 0
CVSZ01000055 805 0
CVSZ01000047 803 0
CVSZ01000039 795 0
CVSZ01000057 702 0
CVSZ01000090 672 0
CVSZ01000066 644 0
CVSZ01000026 587 0
CVSZ01000051 577 0
CVSZ01000013 558 0
CVSZ01000015 531 0
CVSZ01000019 496 0
CVSZ01000083 482 0
CVSZ01000034 481 0
CVSZ01000049 475 0
CVSZ01000084 472 0
CVSZ01000081 470 0
CVSZ01000093 403 0
CVSZ01000048 402 0
CVSZ01000056 391 0
CVSZ01000021 372 0
CVSZ01000077 364 0
CVSZ01000029 360 0
CVSZ01000087 350 0
CVSZ01000022 324 0
CVSZ01000064 310 0
CVSZ01000030 304 0
CVSZ01000046 302 0
CVSZ01000065 297 0
CVSZ01000036 284 0
CVSZ01000082 278 0
CVSZ01000091 274 0
CVSZ01000031 273 0
CVSZ01000044 270 0
CVSZ01000092 267 0
CVSZ01000014 257 0
CVSZ01000027 256 0
CVSZ01000078 252 0
CVSZ01000017 249 0
CVSZ01000002 249 0
CVSZ01000068 248 0
CVSZ01000033 247 0
CVSZ01000053 244 0
CVSZ01000025 236 0
CVSZ01000040 236 0
CVSZ01000069 232 0
CVSZ01000073 225 0
CVSZ01000080 224 0
CVSZ01000070 223 0
CVSZ01000067 222 0
CVSZ01000024 215 0
CVSZ01000032 215 0
CVSZ01000043 215 0
CVSZ01000086 214 0
CVSZ01000085 212 0
CVSZ01000088 210 0
CVSZ01000050 209 0
CVSZ01000062 207 0
CVSZ01000052 202 0
CVSZ01000089 202 0
CVSZ01000001 202 0
Total 1,443,989 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001180325.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001180325.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001180325.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001180325.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001180325.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001180325.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001180325.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001180325.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001180325.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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