cyanobase » Prochlorococcus marinus

Prochlorococcus marinus

Summary

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Data source name GCA_001180305.1
Full name Prochlorococcus marinus External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CVSX01000023 244,384 0
CVSX01000041 228,318 0
CVSX01000040 197,431 0
CVSX01000042 179,685 0
CVSX01000007 159,987 0
CVSX01000027 131,134 0
CVSX01000069 78,973 0
CVSX01000039 73,297 0
CVSX01000011 46,580 0
CVSX01000049 42,908 0
CVSX01000026 24,707 0
CVSX01000064 4,310 0
CVSX01000073 3,951 0
CVSX01000055 3,754 0
CVSX01000021 3,462 0
CVSX01000065 2,275 0
CVSX01000032 2,256 0
CVSX01000015 2,115 0
CVSX01000052 2,104 0
CVSX01000051 1,963 0
CVSX01000030 1,865 0
CVSX01000036 1,366 0
CVSX01000014 1,199 0
CVSX01000074 1,192 0
CVSX01000028 1,046 0
CVSX01000067 1,021 0
CVSX01000022 983 0
CVSX01000043 878 0
CVSX01000058 857 0
CVSX01000002 817 0
CVSX01000059 788 0
CVSX01000081 706 0
CVSX01000037 682 0
CVSX01000063 654 0
CVSX01000010 565 0
CVSX01000017 561 0
CVSX01000078 525 0
CVSX01000085 522 0
CVSX01000057 520 0
CVSX01000054 516 0
CVSX01000072 485 0
CVSX01000076 484 0
CVSX01000024 463 0
CVSX01000050 446 0
CVSX01000001 440 0
CVSX01000020 439 0
CVSX01000060 428 0
CVSX01000047 418 0
CVSX01000004 401 0
CVSX01000077 374 0
CVSX01000079 352 0
CVSX01000070 313 0
CVSX01000025 310 0
CVSX01000062 304 0
CVSX01000038 302 0
CVSX01000013 292 0
CVSX01000080 291 0
CVSX01000068 281 0
CVSX01000083 278 0
CVSX01000053 275 0
CVSX01000016 272 0
CVSX01000034 267 0
CVSX01000066 260 0
CVSX01000019 254 0
CVSX01000029 240 0
CVSX01000045 229 0
CVSX01000031 226 0
CVSX01000071 223 0
CVSX01000035 220 0
CVSX01000056 217 0
CVSX01000033 214 0
CVSX01000084 211 0
CVSX01000008 210 0
CVSX01000003 208 0
CVSX01000048 207 0
CVSX01000082 206 0
CVSX01000075 205 0
CVSX01000006 205 0
CVSX01000061 204 0
CVSX01000009 204 0
CVSX01000005 203 0
CVSX01000018 202 0
CVSX01000044 201 0
CVSX01000046 200 0
CVSX01000012 200 0
Total 1,463,721 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001180305.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001180305.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001180305.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001180305.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001180305.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001180305.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001180305.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001180305.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001180305.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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