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cyanobase » Prochlorococcus marinus

Prochlorococcus marinus

Summary

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Data source name GCA_001180285.1
Full name Prochlorococcus marinus
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CVSY01000074 167,271 0
CVSY01000134 140,622 0
CVSY01000200 104,571 0
CVSY01000127 100,574 0
CVSY01000015 73,676 0
CVSY01000186 64,916 0
CVSY01000066 60,387 0
CVSY01000060 60,048 0
CVSY01000151 59,916 0
CVSY01000209 45,128 0
CVSY01000100 43,605 0
CVSY01000093 41,831 0
CVSY01000197 29,868 0
CVSY01000123 29,734 0
CVSY01000012 29,535 0
CVSY01000164 24,309 0
CVSY01000195 22,849 0
CVSY01000003 20,766 0
CVSY01000154 20,224 0
CVSY01000129 17,299 0
CVSY01000076 15,261 0
CVSY01000088 9,731 0
CVSY01000160 6,395 0
CVSY01000205 3,367 0
CVSY01000135 2,675 0
CVSY01000110 2,578 0
CVSY01000140 2,373 0
CVSY01000044 2,279 0
CVSY01000136 2,038 0
CVSY01000220 2,032 0
CVSY01000026 2,018 0
CVSY01000010 1,894 0
CVSY01000130 1,340 0
CVSY01000025 1,227 0
CVSY01000063 1,216 0
CVSY01000045 1,186 0
CVSY01000017 1,076 0
CVSY01000009 1,075 0
CVSY01000061 1,036 0
CVSY01000132 1,028 0
CVSY01000137 970 0
CVSY01000166 969 0
CVSY01000165 897 0
CVSY01000039 849 0
CVSY01000190 838 0
CVSY01000059 819 0
CVSY01000142 816 0
CVSY01000080 811 0
CVSY01000022 772 0
CVSY01000077 765 0
CVSY01000199 745 0
CVSY01000082 690 0
CVSY01000097 689 0
CVSY01000126 684 0
CVSY01000052 660 0
CVSY01000211 647 0
CVSY01000095 643 0
CVSY01000078 618 0
CVSY01000141 601 0
CVSY01000202 594 0
CVSY01000124 593 0
CVSY01000169 592 0
CVSY01000175 581 0
CVSY01000087 570 0
CVSY01000215 565 0
CVSY01000168 546 0
CVSY01000001 530 0
CVSY01000170 521 0
CVSY01000067 516 0
CVSY01000006 513 0
CVSY01000218 509 0
CVSY01000106 509 0
CVSY01000089 507 0
CVSY01000187 504 0
CVSY01000112 499 0
CVSY01000171 498 0
CVSY01000081 475 0
CVSY01000119 471 0
CVSY01000162 468 0
CVSY01000161 465 0
CVSY01000042 464 0
CVSY01000159 464 0
CVSY01000083 454 0
CVSY01000084 432 0
CVSY01000131 411 0
CVSY01000064 409 0
CVSY01000056 400 0
CVSY01000032 399 0
CVSY01000024 394 0
CVSY01000176 392 0
CVSY01000079 391 0
CVSY01000038 383 0
CVSY01000203 377 0
CVSY01000002 375 0
CVSY01000090 372 0
CVSY01000016 367 0
CVSY01000040 363 0
CVSY01000108 356 0
CVSY01000054 355 0
CVSY01000103 352 0
CVSY01000101 351 0
CVSY01000206 349 0
CVSY01000055 348 0
CVSY01000014 343 0
CVSY01000046 342 0
CVSY01000173 341 0
CVSY01000146 340 0
CVSY01000086 340 0
CVSY01000098 338 0
CVSY01000198 330 0
CVSY01000167 329 0
CVSY01000069 326 0
CVSY01000157 325 0
CVSY01000212 325 0
CVSY01000099 318 0
CVSY01000027 316 0
CVSY01000121 306 0
CVSY01000047 304 0
CVSY01000143 297 0
CVSY01000092 297 0
CVSY01000072 296 0
CVSY01000031 292 0
CVSY01000156 292 0
CVSY01000120 291 0
CVSY01000117 290 0
CVSY01000094 278 0
CVSY01000204 277 0
CVSY01000033 277 0
CVSY01000163 277 0
CVSY01000070 274 0
CVSY01000150 273 0
CVSY01000034 270 0
CVSY01000062 269 0
CVSY01000221 268 0
CVSY01000118 267 0
CVSY01000049 267 0
CVSY01000036 265 0
CVSY01000122 261 0
CVSY01000005 261 0
CVSY01000116 260 0
CVSY01000172 260 0
CVSY01000138 258 0
CVSY01000096 257 0
CVSY01000182 257 0
CVSY01000109 256 0
CVSY01000043 256 0
CVSY01000013 256 0
CVSY01000217 255 0
CVSY01000091 253 0
CVSY01000174 252 0
CVSY01000104 251 0
CVSY01000139 251 0
CVSY01000030 251 0
CVSY01000068 251 0
CVSY01000192 250 0
CVSY01000155 250 0
CVSY01000037 250 0
CVSY01000114 249 0
CVSY01000051 248 0
CVSY01000029 248 0
CVSY01000189 248 0
CVSY01000183 247 0
CVSY01000181 244 0
CVSY01000158 242 0
CVSY01000071 240 0
CVSY01000050 240 0
CVSY01000011 240 0
CVSY01000144 236 0
CVSY01000219 236 0
CVSY01000214 234 0
CVSY01000041 234 0
CVSY01000019 234 0
CVSY01000105 232 0
CVSY01000113 232 0
CVSY01000180 231 0
CVSY01000147 231 0
CVSY01000201 230 0
CVSY01000007 230 0
CVSY01000065 230 0
CVSY01000152 230 0
CVSY01000207 229 0
CVSY01000048 227 0
CVSY01000075 226 0
CVSY01000194 226 0
CVSY01000208 225 0
CVSY01000073 223 0
CVSY01000125 223 0
CVSY01000058 223 0
CVSY01000179 222 0
CVSY01000102 220 0
CVSY01000111 220 0
CVSY01000053 219 0
CVSY01000216 218 0
CVSY01000128 217 0
CVSY01000004 216 0
CVSY01000133 215 0
CVSY01000213 215 0
CVSY01000115 215 0
CVSY01000193 214 0
CVSY01000153 213 0
CVSY01000008 212 0
CVSY01000148 211 0
CVSY01000145 211 0
CVSY01000149 209 0
CVSY01000035 208 0
CVSY01000184 208 0
CVSY01000085 207 0
CVSY01000028 206 0
CVSY01000021 206 0
CVSY01000057 205 0
CVSY01000177 205 0
CVSY01000188 204 0
CVSY01000020 204 0
CVSY01000178 204 0
CVSY01000210 204 0
CVSY01000023 203 0
CVSY01000107 202 0
CVSY01000018 202 0
CVSY01000196 201 0
CVSY01000191 200 0
CVSY01000185 200 0
Total 1,282,941 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_001180285.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_001180285.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_001180285.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_001180285.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001180285.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001180285.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001180285.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001180285.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001180285.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001180285.1/genes/interpro.txt (File format)

MicrobeBase