cyanobase » Prochlorococcus marinus

Prochlorococcus marinus

Summary

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Data source name GCA_001180265.1
Full name Prochlorococcus marinus External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CVSW01000032 519,987 0
CVSW01000010 221,123 0
CVSW01000006 113,957 0
CVSW01000063 90,122 0
CVSW01000097 77,228 0
CVSW01000073 69,567 0
CVSW01000101 57,726 0
CVSW01000107 51,545 0
CVSW01000109 42,085 0
CVSW01000068 27,779 0
CVSW01000014 15,193 0
CVSW01000052 11,778 0
CVSW01000093 11,087 0
CVSW01000081 7,406 0
CVSW01000012 5,374 0
CVSW01000079 2,887 0
CVSW01000002 2,589 0
CVSW01000036 2,319 0
CVSW01000076 2,148 0
CVSW01000050 1,929 0
CVSW01000035 1,847 0
CVSW01000089 1,831 0
CVSW01000027 1,680 0
CVSW01000099 1,657 0
CVSW01000024 1,482 0
CVSW01000105 1,400 0
CVSW01000031 1,323 0
CVSW01000095 1,289 0
CVSW01000100 1,198 0
CVSW01000102 1,162 0
CVSW01000075 1,128 0
CVSW01000038 1,126 0
CVSW01000078 1,085 0
CVSW01000049 1,045 0
CVSW01000018 968 0
CVSW01000112 918 0
CVSW01000015 903 0
CVSW01000021 894 0
CVSW01000057 887 0
CVSW01000044 879 0
CVSW01000003 856 0
CVSW01000083 826 0
CVSW01000022 820 0
CVSW01000106 784 0
CVSW01000009 764 0
CVSW01000086 753 0
CVSW01000061 731 0
CVSW01000087 710 0
CVSW01000098 672 0
CVSW01000119 669 0
CVSW01000023 641 0
CVSW01000090 606 0
CVSW01000113 582 0
CVSW01000041 570 0
CVSW01000007 553 0
CVSW01000116 528 0
CVSW01000025 510 0
CVSW01000084 476 0
CVSW01000120 467 0
CVSW01000019 464 0
CVSW01000104 461 0
CVSW01000070 459 0
CVSW01000077 455 0
CVSW01000069 454 0
CVSW01000030 440 0
CVSW01000118 422 0
CVSW01000096 404 0
CVSW01000080 397 0
CVSW01000040 396 0
CVSW01000054 386 0
CVSW01000016 381 0
CVSW01000059 380 0
CVSW01000028 375 0
CVSW01000051 350 0
CVSW01000094 318 0
CVSW01000013 317 0
CVSW01000056 313 0
CVSW01000067 307 0
CVSW01000082 301 0
CVSW01000058 300 0
CVSW01000114 295 0
CVSW01000037 293 0
CVSW01000071 287 0
CVSW01000045 287 0
CVSW01000085 287 0
CVSW01000033 278 0
CVSW01000072 277 0
CVSW01000103 269 0
CVSW01000066 268 0
CVSW01000026 264 0
CVSW01000005 262 0
CVSW01000092 257 0
CVSW01000039 257 0
CVSW01000017 255 0
CVSW01000062 255 0
CVSW01000110 246 0
CVSW01000008 246 0
CVSW01000029 244 0
CVSW01000048 243 0
CVSW01000117 242 0
CVSW01000108 238 0
CVSW01000042 234 0
CVSW01000091 232 0
CVSW01000020 230 0
CVSW01000065 226 0
CVSW01000115 225 0
CVSW01000074 224 0
CVSW01000034 222 0
CVSW01000011 217 0
CVSW01000060 212 0
CVSW01000053 211 0
CVSW01000043 210 0
CVSW01000004 210 0
CVSW01000111 207 0
CVSW01000088 206 0
CVSW01000001 205 0
CVSW01000055 205 0
CVSW01000064 204 0
CVSW01000046 204 0
CVSW01000047 204 0
Total 1,388,767 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001180265.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001180265.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001180265.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001180265.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001180265.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001180265.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001180265.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001180265.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001180265.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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