cyanobase » Prochlorococcus marinus

Prochlorococcus marinus

Summary

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Data source name GCA_001180245.1
Full name Prochlorococcus marinus External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
CVSV01000131 500,623 0
CVSV01000116 153,149 0
CVSV01000037 125,993 0
CVSV01000061 124,187 0
CVSV01000075 121,494 0
CVSV01000109 99,554 0
CVSV01000045 88,289 0
CVSV01000021 35,995 0
CVSV01000040 35,856 0
CVSV01000134 28,948 0
CVSV01000005 12,709 0
CVSV01000082 12,357 0
CVSV01000081 9,217 0
CVSV01000023 5,634 0
CVSV01000011 4,120 0
CVSV01000100 3,984 0
CVSV01000028 3,043 0
CVSV01000135 2,655 0
CVSV01000132 2,476 0
CVSV01000018 2,380 0
CVSV01000032 1,774 0
CVSV01000002 1,759 0
CVSV01000121 1,227 0
CVSV01000119 1,204 0
CVSV01000115 940 0
CVSV01000114 838 0
CVSV01000096 826 0
CVSV01000106 789 0
CVSV01000024 785 0
CVSV01000001 750 0
CVSV01000126 731 0
CVSV01000122 729 0
CVSV01000103 640 0
CVSV01000127 635 0
CVSV01000016 605 0
CVSV01000063 598 0
CVSV01000004 597 0
CVSV01000049 587 0
CVSV01000057 580 0
CVSV01000092 575 0
CVSV01000098 573 0
CVSV01000093 511 0
CVSV01000050 489 0
CVSV01000031 486 0
CVSV01000054 484 0
CVSV01000107 477 0
CVSV01000035 475 0
CVSV01000052 474 0
CVSV01000120 466 0
CVSV01000105 456 0
CVSV01000020 452 0
CVSV01000060 441 0
CVSV01000099 433 0
CVSV01000019 412 0
CVSV01000095 410 0
CVSV01000046 409 0
CVSV01000036 409 0
CVSV01000087 403 0
CVSV01000124 400 0
CVSV01000111 397 0
CVSV01000117 395 0
CVSV01000039 384 0
CVSV01000010 377 0
CVSV01000025 373 0
CVSV01000123 364 0
CVSV01000055 338 0
CVSV01000015 332 0
CVSV01000058 330 0
CVSV01000118 327 0
CVSV01000073 324 0
CVSV01000030 323 0
CVSV01000026 323 0
CVSV01000097 321 0
CVSV01000101 309 0
CVSV01000048 305 0
CVSV01000006 301 0
CVSV01000027 300 0
CVSV01000066 298 0
CVSV01000009 289 0
CVSV01000094 288 0
CVSV01000069 287 0
CVSV01000064 282 0
CVSV01000007 277 0
CVSV01000129 277 0
CVSV01000113 276 0
CVSV01000125 273 0
CVSV01000130 262 0
CVSV01000065 261 0
CVSV01000008 261 0
CVSV01000086 260 0
CVSV01000088 256 0
CVSV01000051 249 0
CVSV01000133 248 0
CVSV01000044 248 0
CVSV01000059 247 0
CVSV01000136 245 0
CVSV01000079 237 0
CVSV01000014 236 0
CVSV01000072 235 0
CVSV01000067 234 0
CVSV01000078 231 0
CVSV01000047 230 0
CVSV01000104 230 0
CVSV01000085 230 0
CVSV01000090 229 0
CVSV01000071 229 0
CVSV01000068 226 0
CVSV01000041 225 0
CVSV01000043 224 0
CVSV01000070 222 0
CVSV01000102 221 0
CVSV01000074 219 0
CVSV01000022 218 0
CVSV01000062 217 0
CVSV01000033 217 0
CVSV01000083 216 0
CVSV01000042 216 0
CVSV01000089 215 0
CVSV01000003 215 0
CVSV01000110 214 0
CVSV01000108 213 0
CVSV01000076 211 0
CVSV01000080 211 0
CVSV01000077 210 0
CVSV01000084 210 0
CVSV01000013 209 0
CVSV01000038 208 0
CVSV01000029 205 0
CVSV01000112 203 0
CVSV01000053 203 0
CVSV01000091 202 0
CVSV01000128 202 0
CVSV01000012 201 0
CVSV01000034 201 0
CVSV01000056 200 0
CVSV01000017 200 0
Total 1,418,374 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001180245.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001180245.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001180245.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001180245.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001180245.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001180245.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001180245.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001180245.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001180245.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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