cyanobase » Synechococcus sp. GFB01

Synechococcus sp. GFB01

Summary

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Data source name GCA_001039265.1
Full name Synechococcus sp. GFB01 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
LFEK01000111 96,330 66
LFEK01000110 88,368 71
LFEK01000002 86,213 59
LFEK01000123 71,433 47
LFEK01000006 56,660 46
LFEK01000007 52,448 52
LFEK01000017 51,529 35
LFEK01000008 47,407 32
LFEK01000009 47,354 41
LFEK01000010 46,424 28
LFEK01000011 45,992 43
LFEK01000012 44,735 50
LFEK01000038 43,950 34
LFEK01000013 42,491 33
LFEK01000001 41,245 37
LFEK01000014 39,580 26
LFEK01000019 39,472 25
LFEK01000116 39,104 49
LFEK01000033 38,900 33
LFEK01000036 36,940 32
LFEK01000015 33,139 25
LFEK01000018 32,033 22
LFEK01000021 31,611 28
LFEK01000023 29,091 25
LFEK01000026 28,198 17
LFEK01000024 27,555 19
LFEK01000027 27,148 24
LFEK01000016 26,767 18
LFEK01000052 26,569 21
LFEK01000028 26,342 21
LFEK01000039 25,727 15
LFEK01000029 24,081 14
LFEK01000025 22,900 19
LFEK01000030 22,782 15
LFEK01000117 22,395 18
LFEK01000031 21,862 13
LFEK01000032 21,821 15
LFEK01000034 21,219 20
LFEK01000035 21,193 19
LFEK01000046 20,745 12
LFEK01000020 20,603 17
LFEK01000037 19,881 13
LFEK01000055 19,373 19
LFEK01000042 19,219 15
LFEK01000003 18,012 10
LFEK01000040 17,454 15
LFEK01000120 17,307 18
LFEK01000054 17,094 5
LFEK01000041 16,121 10
LFEK01000043 16,025 14
LFEK01000044 15,930 10
LFEK01000045 15,863 15
LFEK01000047 14,972 9
LFEK01000048 14,707 11
LFEK01000049 14,026 12
LFEK01000050 13,972 16
LFEK01000051 13,775 11
LFEK01000124 13,728 13
LFEK01000022 12,995 11
LFEK01000114 12,705 11
LFEK01000109 12,338 7
LFEK01000056 12,079 15
LFEK01000057 11,362 12
LFEK01000121 11,126 4
LFEK01000058 10,966 8
LFEK01000059 10,908 8
LFEK01000060 10,765 6
LFEK01000061 10,737 3
LFEK01000062 10,595 13
LFEK01000063 10,375 7
LFEK01000064 10,308 15
LFEK01000065 10,180 8
LFEK01000113 9,848 10
LFEK01000066 9,677 11
LFEK01000067 9,589 10
LFEK01000068 9,432 8
LFEK01000069 9,255 10
LFEK01000070 8,771 6
LFEK01000071 8,769 3
LFEK01000072 8,463 11
LFEK01000073 8,455 6
LFEK01000074 8,438 9
LFEK01000075 8,376 4
LFEK01000076 8,356 6
LFEK01000077 8,317 9
LFEK01000078 8,046 7
LFEK01000119 8,015 8
LFEK01000079 7,846 7
LFEK01000080 7,832 6
LFEK01000081 7,570 3
LFEK01000082 7,536 9
LFEK01000083 7,420 3
LFEK01000084 7,302 7
LFEK01000085 7,112 4
LFEK01000086 7,074 5
LFEK01000087 7,041 6
LFEK01000088 6,821 6
LFEK01000122 6,338 5
LFEK01000089 6,118 3
LFEK01000090 5,375 5
LFEK01000092 5,275 2
LFEK01000093 5,201 5
LFEK01000094 5,162 3
LFEK01000095 4,873 2
LFEK01000096 4,827 5
LFEK01000097 4,747 4
LFEK01000005 4,736 4
LFEK01000098 4,681 3
LFEK01000099 4,433 5
LFEK01000100 4,239 3
LFEK01000101 4,041 3
LFEK01000102 4,012 2
LFEK01000103 3,935 5
LFEK01000004 3,426 4
LFEK01000104 3,317 2
LFEK01000105 3,260 1
LFEK01000106 3,012 3
LFEK01000107 2,990 3
LFEK01000108 2,948 4
LFEK01000091 2,886 4
LFEK01000125 2,425 3
LFEK01000112 2,408 0
LFEK01000115 1,872 1
LFEK01000118 1,415 1
LFEK01000053 1,245 2
Total 2,339,812 1,841
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001039265.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001039265.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001039265.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001039265.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001039265.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001039265.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001039265.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001039265.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001039265.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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