cyanobase » Candidatus Synechococcus spongiarum 142

Candidatus Synechococcus spongiarum 142

Summary

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Data source name GCA_001007625.1
Full name Candidatus Synechococcus spongiarum 142 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JXUO01000310 85,098 80
JXUO01000284 34,991 22
JXUO01000167 34,059 35
JXUO01000291 31,837 28
JXUO01000286 29,111 31
JXUO01000104 28,314 23
JXUO01000306 27,551 23
JXUO01000255 24,381 18
JXUO01000278 22,986 18
JXUO01000214 22,845 19
JXUO01000231 22,409 21
JXUO01000007 21,234 27
JXUO01000016 21,077 17
JXUO01000234 21,073 16
JXUO01000250 20,593 24
JXUO01000086 20,326 16
JXUO01000325 18,871 15
JXUO01000043 18,206 15
JXUO01000067 18,048 17
JXUO01000087 17,654 16
JXUO01000051 17,538 13
JXUO01000218 16,698 14
JXUO01000014 16,576 13
JXUO01000165 15,676 15
JXUO01000081 15,307 11
JXUO01000133 15,294 14
JXUO01000260 15,031 15
JXUO01000268 14,658 11
JXUO01000326 14,074 12
JXUO01000177 13,212 7
JXUO01000322 13,192 9
JXUO01000324 13,167 11
JXUO01000132 13,098 13
JXUO01000223 13,049 13
JXUO01000314 12,936 12
JXUO01000031 12,839 15
JXUO01000232 12,804 12
JXUO01000323 12,681 11
JXUO01000091 12,606 15
JXUO01000131 12,585 12
JXUO01000077 12,520 9
JXUO01000113 11,982 8
JXUO01000307 11,794 11
JXUO01000169 11,630 13
JXUO01000055 11,519 14
JXUO01000279 11,385 12
JXUO01000023 10,863 5
JXUO01000181 10,839 8
JXUO01000238 10,697 6
JXUO01000318 10,678 9
JXUO01000117 10,465 10
JXUO01000026 10,432 9
JXUO01000289 10,415 10
JXUO01000264 10,157 10
JXUO01000271 10,146 5
JXUO01000047 9,989 3
JXUO01000161 9,985 9
JXUO01000017 9,967 9
JXUO01000053 9,861 5
JXUO01000013 9,835 9
JXUO01000283 9,819 12
JXUO01000211 9,765 9
JXUO01000206 9,764 9
JXUO01000174 9,638 7
JXUO01000195 9,617 7
JXUO01000028 9,583 10
JXUO01000025 9,540 10
JXUO01000057 9,444 11
JXUO01000319 9,346 8
JXUO01000290 9,336 3
JXUO01000253 9,322 15
JXUO01000170 9,206 5
JXUO01000010 8,777 7
JXUO01000083 8,730 8
JXUO01000313 8,669 7
JXUO01000229 8,563 10
JXUO01000308 8,501 4
JXUO01000186 8,484 12
JXUO01000020 8,471 9
JXUO01000151 8,467 7
JXUO01000303 8,404 9
JXUO01000269 8,358 6
JXUO01000237 8,247 7
JXUO01000080 8,223 7
JXUO01000210 8,150 7
JXUO01000280 8,096 8
JXUO01000304 8,033 6
JXUO01000315 8,001 10
JXUO01000182 7,914 6
JXUO01000009 7,890 7
JXUO01000039 7,865 7
JXUO01000140 7,857 4
JXUO01000235 7,843 9
JXUO01000203 7,725 11
JXUO01000162 7,608 4
JXUO01000135 7,537 8
JXUO01000294 7,463 7
JXUO01000194 7,446 7
JXUO01000098 7,442 5
JXUO01000159 7,433 9
JXUO01000150 7,353 8
JXUO01000274 7,191 6
JXUO01000191 7,173 6
JXUO01000249 7,095 4
JXUO01000065 7,089 4
JXUO01000037 7,048 5
JXUO01000004 6,993 7
JXUO01000090 6,986 7
JXUO01000200 6,939 4
JXUO01000248 6,930 6
JXUO01000267 6,918 4
JXUO01000220 6,889 3
JXUO01000176 6,872 4
JXUO01000093 6,861 5
JXUO01000040 6,820 8
JXUO01000172 6,803 7
JXUO01000184 6,682 4
JXUO01000030 6,558 5
JXUO01000282 6,446 4
JXUO01000018 6,385 8
JXUO01000075 6,198 4
JXUO01000263 6,114 6
JXUO01000228 6,081 2
JXUO01000103 6,069 2
JXUO01000302 5,965 5
JXUO01000209 5,941 3
JXUO01000207 5,933 5
JXUO01000226 5,924 5
JXUO01000196 5,822 3
JXUO01000123 5,821 6
JXUO01000281 5,814 4
JXUO01000012 5,788 6
JXUO01000147 5,727 6
JXUO01000293 5,689 4
JXUO01000153 5,684 5
JXUO01000129 5,680 4
JXUO01000154 5,645 3
JXUO01000121 5,604 3
JXUO01000134 5,566 6
JXUO01000059 5,500 4
JXUO01000071 5,485 5
JXUO01000317 5,469 5
JXUO01000309 5,465 4
JXUO01000127 5,464 2
JXUO01000001 5,440 6
JXUO01000052 5,434 3
JXUO01000305 5,346 5
JXUO01000138 5,334 5
JXUO01000171 5,321 7
JXUO01000058 5,311 4
JXUO01000157 5,296 8
JXUO01000179 5,295 4
JXUO01000116 5,246 5
JXUO01000108 5,190 4
JXUO01000096 5,160 4
JXUO01000270 5,131 5
JXUO01000063 5,060 7
JXUO01000095 5,042 5
JXUO01000244 5,011 5
JXUO01000069 4,992 6
JXUO01000092 4,948 4
JXUO01000213 4,944 4
JXUO01000041 4,902 2
JXUO01000141 4,877 3
JXUO01000066 4,876 6
JXUO01000045 4,861 5
JXUO01000187 4,827 4
JXUO01000192 4,782 4
JXUO01000287 4,778 2
JXUO01000049 4,761 5
JXUO01000078 4,718 6
JXUO01000125 4,694 3
JXUO01000300 4,652 6
JXUO01000139 4,648 3
JXUO01000124 4,632 3
JXUO01000285 4,630 5
JXUO01000101 4,618 3
JXUO01000120 4,606 2
JXUO01000099 4,595 2
JXUO01000021 4,578 4
JXUO01000166 4,543 4
JXUO01000084 4,488 5
JXUO01000033 4,464 4
JXUO01000160 4,457 5
JXUO01000074 4,454 1
JXUO01000082 4,425 5
JXUO01000256 4,405 5
JXUO01000114 4,371 4
JXUO01000221 4,315 2
JXUO01000233 4,313 4
JXUO01000060 4,231 3
JXUO01000205 4,228 4
JXUO01000259 4,193 5
JXUO01000109 4,172 5
JXUO01000089 4,151 3
JXUO01000056 4,125 4
JXUO01000163 4,120 3
JXUO01000188 4,117 2
JXUO01000265 4,114 1
JXUO01000247 4,082 2
JXUO01000118 4,078 5
JXUO01000275 4,046 5
JXUO01000044 3,935 1
JXUO01000152 3,920 3
JXUO01000079 3,893 2
JXUO01000005 3,827 2
JXUO01000046 3,746 6
JXUO01000297 3,740 2
JXUO01000054 3,724 3
JXUO01000277 3,686 4
JXUO01000242 3,590 2
JXUO01000292 3,586 2
JXUO01000295 3,568 2
JXUO01000143 3,557 3
JXUO01000202 3,499 3
JXUO01000149 3,498 2
JXUO01000111 3,497 1
JXUO01000062 3,489 1
JXUO01000312 3,486 2
JXUO01000048 3,428 3
JXUO01000006 3,410 5
JXUO01000064 3,410 4
JXUO01000038 3,370 3
JXUO01000201 3,343 3
JXUO01000148 3,330 5
JXUO01000073 3,329 1
JXUO01000076 3,323 2
JXUO01000183 3,301 1
JXUO01000072 3,267 1
JXUO01000008 3,250 5
JXUO01000024 3,243 4
JXUO01000034 3,181 2
JXUO01000122 3,177 1
JXUO01000002 3,162 2
JXUO01000042 3,154 2
JXUO01000246 3,139 2
JXUO01000094 3,124 3
JXUO01000222 3,042 4
JXUO01000011 3,040 3
JXUO01000164 2,998 2
JXUO01000239 2,990 2
JXUO01000227 2,980 3
JXUO01000019 2,962 5
JXUO01000128 2,949 1
JXUO01000178 2,949 2
JXUO01000316 2,938 3
JXUO01000112 2,932 3
JXUO01000142 2,924 3
JXUO01000144 2,917 3
JXUO01000175 2,909 3
JXUO01000230 2,897 2
JXUO01000273 2,882 3
JXUO01000173 2,877 1
JXUO01000212 2,875 4
JXUO01000272 2,871 5
JXUO01000027 2,866 0
JXUO01000003 2,866 4
JXUO01000217 2,857 3
JXUO01000189 2,854 1
JXUO01000199 2,798 2
JXUO01000100 2,793 2
JXUO01000130 2,768 3
JXUO01000102 2,768 3
JXUO01000216 2,760 0
JXUO01000224 2,757 2
JXUO01000185 2,742 2
JXUO01000298 2,729 2
JXUO01000107 2,727 2
JXUO01000015 2,721 2
JXUO01000321 2,685 2
JXUO01000168 2,680 1
JXUO01000110 2,679 2
JXUO01000105 2,652 1
JXUO01000243 2,604 2
JXUO01000085 2,585 1
JXUO01000320 2,574 2
JXUO01000029 2,537 2
JXUO01000266 2,535 3
JXUO01000225 2,525 2
JXUO01000258 2,515 3
JXUO01000146 2,515 2
JXUO01000204 2,509 3
JXUO01000061 2,490 1
JXUO01000197 2,473 3
JXUO01000198 2,465 3
JXUO01000068 2,441 2
JXUO01000193 2,434 0
JXUO01000145 2,377 3
JXUO01000115 2,375 1
JXUO01000106 2,367 3
JXUO01000050 2,296 2
JXUO01000252 2,272 3
JXUO01000288 2,257 2
JXUO01000070 2,244 2
JXUO01000136 2,232 3
JXUO01000158 2,213 3
JXUO01000261 2,208 1
JXUO01000240 2,203 2
JXUO01000251 2,189 2
JXUO01000156 2,185 2
JXUO01000241 2,183 4
JXUO01000219 2,173 3
JXUO01000296 2,170 4
JXUO01000299 2,168 1
JXUO01000190 2,164 2
JXUO01000254 2,154 3
JXUO01000245 2,148 2
JXUO01000301 2,115 3
JXUO01000137 2,111 3
JXUO01000257 2,111 1
JXUO01000097 2,110 2
JXUO01000236 2,108 3
JXUO01000032 2,104 1
JXUO01000276 2,101 1
JXUO01000215 2,091 2
JXUO01000126 2,083 3
JXUO01000311 2,082 3
JXUO01000022 2,082 1
JXUO01000155 2,080 1
JXUO01000088 2,077 2
JXUO01000119 2,063 1
JXUO01000180 2,053 2
JXUO01000036 2,051 2
JXUO01000208 2,034 1
JXUO01000035 2,022 3
JXUO01000262 2,011 2
Total 2,271,413 1,958
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_001007625.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_001007625.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_001007625.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_001007625.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_001007625.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_001007625.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_001007625.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_001007625.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_001007625.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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