cyanobase » Trichodesmium thiebautii H9-4

Trichodesmium thiebautii H9-4

Summary

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Data source name GCA_000987385.1
Full name Trichodesmium thiebautii H9-4 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.

Genome Information

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Chromosomes
Name Size (bp) Genes
LAMW01000047 39,217 0
LAMW01000022 36,800 0
LAMW01000023 36,726 0
LAMW01000165 35,692 0
LAMW01000060 33,517 0
LAMW01000113 32,666 0
LAMW01000142 32,453 0
LAMW01000018 31,747 0
LAMW01000096 30,578 0
LAMW01000052 28,458 0
LAMW01000117 28,414 0
LAMW01000024 28,272 0
LAMW01000068 28,013 0
LAMW01000037 27,980 0
LAMW01000151 27,796 0
LAMW01000045 26,624 0
LAMW01000176 26,602 0
LAMW01000147 26,530 0
LAMW01000115 26,215 0
LAMW01000042 26,022 0
LAMW01000172 25,651 0
LAMW01000090 25,018 0
LAMW01000008 24,683 0
LAMW01000087 24,533 0
LAMW01000007 24,509 0
LAMW01000169 23,579 0
LAMW01000116 23,439 0
LAMW01000156 23,201 0
LAMW01000155 23,117 0
LAMW01000064 22,981 0
LAMW01000050 22,817 0
LAMW01000063 22,536 0
LAMW01000180 22,515 0
LAMW01000094 21,718 0
LAMW01000182 21,665 0
LAMW01000089 21,311 0
LAMW01000067 21,092 0
LAMW01000149 20,958 0
LAMW01000173 20,611 0
LAMW01000069 20,609 0
LAMW01000013 20,526 0
LAMW01000065 19,896 0
LAMW01000105 19,654 0
LAMW01000020 19,509 0
LAMW01000197 19,494 0
LAMW01000201 19,324 0
LAMW01000108 19,034 0
LAMW01000128 19,032 0
LAMW01000072 18,892 0
LAMW01000177 18,850 0
LAMW01000092 18,786 0
LAMW01000138 18,531 0
LAMW01000091 18,463 0
LAMW01000118 18,457 0
LAMW01000062 18,423 0
LAMW01000058 18,384 0
LAMW01000057 18,164 0
LAMW01000054 18,153 0
LAMW01000102 17,977 0
LAMW01000014 17,920 0
LAMW01000143 17,748 0
LAMW01000164 17,742 0
LAMW01000144 17,508 0
LAMW01000028 17,353 0
LAMW01000137 17,325 0
LAMW01000107 17,221 0
LAMW01000148 17,138 0
LAMW01000188 17,098 0
LAMW01000196 16,946 0
LAMW01000075 16,939 0
LAMW01000190 16,616 0
LAMW01000015 16,545 0
LAMW01000001 16,451 0
LAMW01000019 16,414 0
LAMW01000097 16,225 0
LAMW01000061 16,194 0
LAMW01000133 16,170 0
LAMW01000181 15,923 0
LAMW01000125 15,891 0
LAMW01000049 15,670 0
LAMW01000152 15,642 0
LAMW01000051 15,478 0
LAMW01000002 15,440 0
LAMW01000053 15,398 0
LAMW01000098 15,317 0
LAMW01000088 15,317 0
LAMW01000046 15,287 0
LAMW01000010 15,271 0
LAMW01000166 15,156 0
LAMW01000194 15,116 0
LAMW01000193 15,107 0
LAMW01000175 14,864 0
LAMW01000174 14,862 0
LAMW01000026 14,780 0
LAMW01000100 14,709 0
LAMW01000192 14,389 0
LAMW01000161 14,344 0
LAMW01000120 14,292 0
LAMW01000086 14,284 0
LAMW01000110 14,277 0
LAMW01000136 14,277 0
LAMW01000114 14,226 0
LAMW01000171 14,034 0
LAMW01000123 14,008 0
LAMW01000005 14,001 0
LAMW01000185 13,801 0
LAMW01000070 13,789 0
LAMW01000126 13,658 0
LAMW01000122 13,611 0
LAMW01000031 13,601 0
LAMW01000132 13,597 0
LAMW01000170 13,587 0
LAMW01000178 13,569 0
LAMW01000066 13,543 0
LAMW01000145 13,506 0
LAMW01000009 13,499 0
LAMW01000003 13,419 0
LAMW01000011 13,388 0
LAMW01000135 13,197 0
LAMW01000021 13,165 0
LAMW01000033 13,155 0
LAMW01000140 13,154 0
LAMW01000106 13,133 0
LAMW01000154 13,075 0
LAMW01000191 12,970 0
LAMW01000071 12,942 0
LAMW01000127 12,934 0
LAMW01000099 12,919 0
LAMW01000184 12,902 0
LAMW01000030 12,859 0
LAMW01000074 12,799 0
LAMW01000199 12,703 0
LAMW01000032 12,690 0
LAMW01000198 12,669 0
LAMW01000104 12,585 0
LAMW01000083 12,555 0
LAMW01000038 12,547 0
LAMW01000168 12,475 0
LAMW01000141 12,462 0
LAMW01000195 12,450 0
LAMW01000059 12,432 0
LAMW01000163 12,421 0
LAMW01000162 12,409 0
LAMW01000081 12,225 0
LAMW01000139 12,189 0
LAMW01000109 12,188 0
LAMW01000131 12,177 0
LAMW01000056 12,143 0
LAMW01000036 12,123 0
LAMW01000119 12,116 0
LAMW01000186 12,054 0
LAMW01000158 12,034 0
LAMW01000187 11,979 0
LAMW01000076 11,812 0
LAMW01000095 11,800 0
LAMW01000004 11,764 0
LAMW01000029 11,748 0
LAMW01000027 11,742 0
LAMW01000183 11,590 0
LAMW01000077 11,535 0
LAMW01000189 11,422 0
LAMW01000084 11,416 0
LAMW01000080 11,332 0
LAMW01000048 11,303 0
LAMW01000044 11,296 0
LAMW01000073 11,275 0
LAMW01000153 11,183 0
LAMW01000160 11,151 0
LAMW01000124 11,121 0
LAMW01000078 11,089 0
LAMW01000157 11,073 0
LAMW01000111 10,958 0
LAMW01000055 10,941 0
LAMW01000159 10,931 0
LAMW01000012 10,890 0
LAMW01000035 10,877 0
LAMW01000016 10,829 0
LAMW01000179 10,806 0
LAMW01000112 10,799 0
LAMW01000041 10,798 0
LAMW01000129 10,756 0
LAMW01000079 10,744 0
LAMW01000085 10,709 0
LAMW01000150 10,678 0
LAMW01000082 10,436 0
LAMW01000200 10,415 0
LAMW01000146 10,363 0
LAMW01000167 10,340 0
LAMW01000034 10,329 0
LAMW01000130 10,324 0
LAMW01000039 10,254 0
LAMW01000121 10,201 0
LAMW01000017 10,189 0
LAMW01000040 10,156 0
LAMW01000101 10,154 0
LAMW01000025 10,114 0
LAMW01000093 10,087 0
LAMW01000103 10,055 0
LAMW01000006 10,024 0
LAMW01000134 10,021 0
LAMW01000043 10,001 0
Total 3,286,556 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000987385.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000987385.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000987385.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000987385.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000987385.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000987385.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000987385.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000987385.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000987385.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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