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cyanobase » Arthrospira sp. TJSD091

Arthrospira sp. TJSD091

Summary

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Data source name GCA_000974245.1
Full name Arthrospira sp. TJSD091
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.

Genome Information

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Chromosomes
Name Size (bp) Genes
LAYT01000059 164,291 0
LAYT01000069 144,102 0
LAYT01000176 141,138 0
LAYT01000064 139,469 0
LAYT01000238 135,626 0
LAYT01000093 123,908 0
LAYT01000283 123,086 0
LAYT01000266 114,307 0
LAYT01000161 102,737 0
LAYT01000140 96,014 0
LAYT01000024 94,630 0
LAYT01000054 90,500 0
LAYT01000043 85,127 0
LAYT01000316 84,247 0
LAYT01000005 81,441 0
LAYT01000325 81,112 0
LAYT01000055 76,397 0
LAYT01000033 76,394 0
LAYT01000265 74,134 0
LAYT01000089 70,577 0
LAYT01000099 70,293 0
LAYT01000224 66,829 0
LAYT01000194 63,750 0
LAYT01000056 61,516 0
LAYT01000035 61,460 0
LAYT01000208 61,197 0
LAYT01000010 60,384 0
LAYT01000174 59,308 0
LAYT01000294 58,354 0
LAYT01000032 56,108 0
LAYT01000313 54,096 0
LAYT01000337 53,926 0
LAYT01000088 53,630 0
LAYT01000291 50,459 0
LAYT01000147 50,394 0
LAYT01000098 49,578 0
LAYT01000323 47,639 0
LAYT01000087 46,708 0
LAYT01000192 46,480 0
LAYT01000324 46,474 0
LAYT01000185 46,264 0
LAYT01000164 45,913 0
LAYT01000296 44,736 0
LAYT01000086 44,218 0
LAYT01000158 40,650 0
LAYT01000234 39,966 0
LAYT01000244 39,668 0
LAYT01000322 38,529 0
LAYT01000181 38,397 0
LAYT01000258 38,351 0
LAYT01000085 38,012 0
LAYT01000223 37,918 0
LAYT01000346 36,301 0
LAYT01000340 36,255 0
LAYT01000251 35,803 0
LAYT01000259 35,470 0
LAYT01000289 34,487 0
LAYT01000196 33,787 0
LAYT01000301 33,221 0
LAYT01000236 32,868 0
LAYT01000153 31,425 0
LAYT01000162 31,095 0
LAYT01000252 31,001 0
LAYT01000136 30,463 0
LAYT01000221 30,087 0
LAYT01000067 29,812 0
LAYT01000333 29,363 0
LAYT01000065 28,774 0
LAYT01000228 28,399 0
LAYT01000167 27,811 0
LAYT01000127 27,759 0
LAYT01000046 27,530 0
LAYT01000312 27,273 0
LAYT01000170 27,255 0
LAYT01000152 27,157 0
LAYT01000237 26,462 0
LAYT01000116 26,386 0
LAYT01000076 25,957 0
LAYT01000014 24,016 0
LAYT01000077 23,645 0
LAYT01000350 23,611 0
LAYT01000028 23,246 0
LAYT01000002 23,223 0
LAYT01000308 22,794 0
LAYT01000297 22,567 0
LAYT01000299 22,527 0
LAYT01000066 22,027 0
LAYT01000006 21,992 0
LAYT01000156 21,866 0
LAYT01000327 21,609 0
LAYT01000229 21,589 0
LAYT01000012 20,996 0
LAYT01000141 20,618 0
LAYT01000320 20,592 0
LAYT01000315 20,371 0
LAYT01000142 19,232 0
LAYT01000197 18,355 0
LAYT01000239 17,670 0
LAYT01000034 17,361 0
LAYT01000119 17,156 0
LAYT01000269 17,060 0
LAYT01000172 16,191 0
LAYT01000030 16,114 0
LAYT01000108 16,005 0
LAYT01000339 15,835 0
LAYT01000138 15,227 0
LAYT01000018 14,326 0
LAYT01000073 14,135 0
LAYT01000220 13,661 0
LAYT01000343 13,319 0
LAYT01000352 13,274 0
LAYT01000341 12,925 0
LAYT01000264 12,825 0
LAYT01000300 12,629 0
LAYT01000003 12,587 0
LAYT01000272 12,440 0
LAYT01000132 12,377 0
LAYT01000135 12,337 0
LAYT01000084 12,083 0
LAYT01000050 11,797 0
LAYT01000009 11,788 0
LAYT01000304 11,733 0
LAYT01000044 11,672 0
LAYT01000019 11,655 0
LAYT01000137 11,571 0
LAYT01000078 11,460 0
LAYT01000100 11,368 0
LAYT01000357 11,232 0
LAYT01000021 11,129 0
LAYT01000130 11,042 0
LAYT01000253 10,867 0
LAYT01000171 10,465 0
LAYT01000079 10,282 0
LAYT01000292 10,175 0
LAYT01000082 9,825 0
LAYT01000075 9,564 0
LAYT01000332 9,056 0
LAYT01000268 8,467 0
LAYT01000345 8,413 0
LAYT01000178 8,326 0
LAYT01000004 8,279 0
LAYT01000286 8,225 0
LAYT01000057 8,213 0
LAYT01000139 8,160 0
LAYT01000227 8,154 0
LAYT01000131 8,130 0
LAYT01000298 8,042 0
LAYT01000008 7,939 0
LAYT01000025 7,792 0
LAYT01000233 7,716 0
LAYT01000017 7,644 0
LAYT01000036 7,635 0
LAYT01000328 7,580 0
LAYT01000080 7,189 0
LAYT01000355 7,145 0
LAYT01000038 7,044 0
LAYT01000045 6,967 0
LAYT01000096 6,881 0
LAYT01000276 6,518 0
LAYT01000219 6,403 0
LAYT01000150 6,228 0
LAYT01000222 6,204 0
LAYT01000326 5,883 0
LAYT01000243 5,829 0
LAYT01000048 5,759 0
LAYT01000095 5,734 0
LAYT01000321 5,694 0
LAYT01000288 5,589 0
LAYT01000359 5,543 0
LAYT01000231 5,516 0
LAYT01000154 5,511 0
LAYT01000177 5,349 0
LAYT01000104 5,324 0
LAYT01000314 5,179 0
LAYT01000358 5,170 0
LAYT01000275 5,111 0
LAYT01000214 5,030 0
LAYT01000007 4,962 0
LAYT01000097 4,872 0
LAYT01000074 4,861 0
LAYT01000307 4,851 0
LAYT01000280 4,744 0
LAYT01000344 4,728 0
LAYT01000112 4,677 0
LAYT01000058 4,575 0
LAYT01000061 4,540 0
LAYT01000267 4,312 0
LAYT01000256 4,261 0
LAYT01000271 4,239 0
LAYT01000282 4,200 0
LAYT01000157 4,168 0
LAYT01000060 4,161 0
LAYT01000022 4,142 0
LAYT01000133 4,086 0
LAYT01000245 4,062 0
LAYT01000068 3,888 0
LAYT01000143 3,873 0
LAYT01000013 3,594 0
LAYT01000205 3,579 0
LAYT01000309 3,546 0
LAYT01000232 3,491 0
LAYT01000015 3,423 0
LAYT01000102 3,252 0
LAYT01000169 3,108 0
LAYT01000123 3,054 0
LAYT01000103 3,021 0
LAYT01000120 3,018 0
LAYT01000027 3,010 0
LAYT01000261 2,925 0
LAYT01000195 2,907 0
LAYT01000230 2,902 0
LAYT01000310 2,885 0
LAYT01000049 2,835 0
LAYT01000331 2,785 0
LAYT01000356 2,777 0
LAYT01000201 2,771 0
LAYT01000336 2,714 0
LAYT01000290 2,644 0
LAYT01000277 2,561 0
LAYT01000023 2,542 0
LAYT01000040 2,523 0
LAYT01000072 2,204 0
LAYT01000303 2,154 0
LAYT01000349 2,138 0
LAYT01000063 2,108 0
LAYT01000226 2,079 0
LAYT01000338 2,061 0
LAYT01000111 2,021 0
LAYT01000175 1,992 0
LAYT01000295 1,965 0
LAYT01000110 1,961 0
LAYT01000182 1,948 0
LAYT01000216 1,947 0
LAYT01000260 1,918 0
LAYT01000263 1,902 0
LAYT01000209 1,885 0
LAYT01000039 1,849 0
LAYT01000285 1,809 0
LAYT01000042 1,752 0
LAYT01000031 1,743 0
LAYT01000052 1,733 0
LAYT01000128 1,727 0
LAYT01000248 1,625 0
LAYT01000105 1,564 0
LAYT01000204 1,563 0
LAYT01000242 1,482 0
LAYT01000129 1,468 0
LAYT01000020 1,421 0
LAYT01000115 1,413 0
LAYT01000279 1,385 0
LAYT01000347 1,374 0
LAYT01000125 1,369 0
LAYT01000329 1,318 0
LAYT01000191 1,310 0
LAYT01000335 1,251 0
LAYT01000206 1,250 0
LAYT01000311 1,248 0
LAYT01000144 1,228 0
LAYT01000281 1,216 0
LAYT01000262 1,212 0
LAYT01000083 1,211 0
LAYT01000240 1,198 0
LAYT01000047 1,175 0
LAYT01000202 1,166 0
LAYT01000353 1,142 0
LAYT01000354 1,074 0
LAYT01000113 982 0
LAYT01000155 980 0
LAYT01000254 965 0
LAYT01000186 959 0
LAYT01000121 955 0
LAYT01000342 910 0
LAYT01000189 898 0
LAYT01000270 890 0
LAYT01000190 876 0
LAYT01000091 850 0
LAYT01000148 849 0
LAYT01000051 846 0
LAYT01000160 840 0
LAYT01000114 822 0
LAYT01000126 800 0
LAYT01000016 788 0
LAYT01000180 771 0
LAYT01000149 749 0
LAYT01000250 721 0
LAYT01000187 720 0
LAYT01000118 714 0
LAYT01000041 681 0
LAYT01000302 677 0
LAYT01000094 607 0
LAYT01000210 592 0
LAYT01000163 589 0
LAYT01000241 583 0
LAYT01000199 533 0
LAYT01000351 515 0
LAYT01000217 512 0
LAYT01000284 499 0
LAYT01000213 489 0
LAYT01000070 489 0
LAYT01000188 488 0
LAYT01000071 487 0
LAYT01000348 446 0
LAYT01000319 438 0
LAYT01000173 428 0
LAYT01000215 427 0
LAYT01000101 423 0
LAYT01000107 422 0
LAYT01000109 421 0
LAYT01000193 409 0
LAYT01000053 398 0
LAYT01000106 395 0
LAYT01000207 395 0
LAYT01000124 393 0
LAYT01000011 384 0
LAYT01000090 378 0
LAYT01000330 352 0
LAYT01000001 348 0
LAYT01000235 342 0
LAYT01000225 336 0
LAYT01000278 328 0
LAYT01000317 327 0
LAYT01000211 319 0
LAYT01000200 313 0
LAYT01000122 312 0
LAYT01000218 307 0
LAYT01000151 301 0
LAYT01000255 299 0
LAYT01000334 299 0
LAYT01000026 294 0
LAYT01000081 292 0
LAYT01000146 277 0
LAYT01000092 273 0
LAYT01000273 270 0
LAYT01000183 269 0
LAYT01000166 265 0
LAYT01000247 257 0
LAYT01000165 253 0
LAYT01000306 250 0
LAYT01000184 250 0
LAYT01000287 248 0
LAYT01000249 244 0
LAYT01000198 238 0
LAYT01000293 236 0
LAYT01000134 235 0
LAYT01000159 232 0
LAYT01000318 231 0
LAYT01000257 229 0
LAYT01000246 227 0
LAYT01000062 220 0
LAYT01000029 219 0
LAYT01000037 218 0
LAYT01000117 214 0
LAYT01000168 214 0
LAYT01000305 210 0
LAYT01000212 209 0
LAYT01000274 207 0
LAYT01000203 200 0
LAYT01000145 200 0
LAYT01000179 200 0
Total 5,978,827 0
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000974245.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000974245.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000974245.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000974245.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000974245.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000974245.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000974245.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000974245.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000974245.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000974245.1/genes/interpro.txt (File format)

MicrobeBase