cyanobase » Limnoraphis robusta CS-951

Limnoraphis robusta CS-951

Summary

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Data source name GCA_000972705.2
Full name Limnoraphis robusta CS-951 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Limnoraphis.

Genome Information

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Chromosomes
Name Size (bp) Genes
LATL02000101 90,657 68
LATL02000332 85,495 74
LATL02000068 78,082 61
LATL02000301 72,077 58
LATL02000178 69,979 54
LATL02000337 65,089 36
LATL02000355 63,056 36
LATL02000123 60,415 48
LATL02000156 56,652 25
LATL02000252 54,546 23
LATL02000069 54,496 44
LATL02000253 53,247 42
LATL02000014 53,182 40
LATL02000279 50,263 35
LATL02000056 49,467 41
LATL02000181 48,849 42
LATL02000119 47,290 28
LATL02000055 46,960 35
LATL02000323 46,759 38
LATL02000307 46,479 32
LATL02000133 46,071 29
LATL02000229 45,919 40
LATL02000045 45,007 49
LATL02000177 43,966 30
LATL02000310 42,944 31
LATL02000009 42,686 23
LATL02000286 41,918 24
LATL02000204 41,544 36
LATL02000083 41,448 36
LATL02000235 41,440 37
LATL02000128 40,385 24
LATL02000011 40,019 25
LATL02000086 39,565 35
LATL02000058 39,547 17
LATL02000265 39,252 32
LATL02000071 38,800 30
LATL02000238 38,471 22
LATL02000096 38,420 34
LATL02000141 38,026 33
LATL02000025 37,118 34
LATL02000154 36,805 40
LATL02000216 36,681 34
LATL02000345 35,493 25
LATL02000350 35,108 29
LATL02000359 34,982 23
LATL02000073 34,164 30
LATL02000255 34,067 28
LATL02000090 33,013 28
LATL02000036 32,838 22
LATL02000114 32,616 24
LATL02000218 31,983 6
LATL02000300 31,971 24
LATL02000140 31,821 25
LATL02000095 31,781 29
LATL02000081 31,517 25
LATL02000088 30,495 19
LATL02000094 30,322 33
LATL02000214 30,066 27
LATL02000308 29,746 23
LATL02000057 29,409 21
LATL02000361 29,328 26
LATL02000023 29,161 25
LATL02000242 29,063 18
LATL02000168 28,775 22
LATL02000003 28,431 23
LATL02000167 28,399 16
LATL02000347 28,129 22
LATL02000144 28,089 19
LATL02000276 27,892 20
LATL02000241 27,395 25
LATL02000339 27,371 18
LATL02000193 27,292 19
LATL02000356 27,244 25
LATL02000232 26,973 17
LATL02000080 26,626 19
LATL02000184 26,492 31
LATL02000044 25,785 14
LATL02000016 25,762 18
LATL02000294 25,756 21
LATL02000149 25,487 21
LATL02000122 25,388 15
LATL02000311 25,329 28
LATL02000263 25,202 14
LATL02000024 24,850 17
LATL02000092 24,791 17
LATL02000120 24,785 15
LATL02000275 24,249 12
LATL02000203 24,224 22
LATL02000131 24,152 17
LATL02000113 23,981 17
LATL02000135 23,975 13
LATL02000118 23,938 18
LATL02000264 23,917 12
LATL02000112 23,819 17
LATL02000349 23,791 11
LATL02000212 23,657 18
LATL02000303 23,627 15
LATL02000258 23,579 13
LATL02000224 23,470 27
LATL02000084 23,308 11
LATL02000298 23,119 21
LATL02000075 23,118 11
LATL02000170 22,807 12
LATL02000093 22,795 21
LATL02000040 22,790 15
LATL02000284 22,722 15
LATL02000039 22,506 22
LATL02000314 22,479 16
LATL02000222 22,461 18
LATL02000269 22,443 14
LATL02000353 22,362 35
LATL02000152 22,355 21
LATL02000312 22,049 15
LATL02000237 21,669 17
LATL02000187 21,482 23
LATL02000190 21,471 12
LATL02000261 21,448 12
LATL02000317 21,446 10
LATL02000213 21,406 14
LATL02000006 21,375 17
LATL02000233 21,356 13
LATL02000126 21,339 17
LATL02000053 21,335 18
LATL02000304 21,261 11
LATL02000200 21,095 14
LATL02000196 21,088 19
LATL02000127 21,087 9
LATL02000194 21,003 17
LATL02000273 20,722 21
LATL02000164 20,670 14
LATL02000292 20,535 13
LATL02000138 20,409 17
LATL02000079 20,366 14
LATL02000230 20,330 13
LATL02000267 19,949 20
LATL02000062 19,878 15
LATL02000082 19,590 14
LATL02000070 19,459 14
LATL02000357 19,395 16
LATL02000245 19,240 11
LATL02000065 19,117 15
LATL02000004 19,112 15
LATL02000143 19,090 20
LATL02000186 19,080 18
LATL02000272 19,026 16
LATL02000221 18,956 14
LATL02000063 18,940 13
LATL02000226 18,684 17
LATL02000002 18,570 19
LATL02000091 18,548 10
LATL02000243 18,534 13
LATL02000157 18,428 13
LATL02000051 18,419 20
LATL02000225 18,290 15
LATL02000220 18,142 15
LATL02000283 18,132 14
LATL02000234 17,876 16
LATL02000209 17,778 0
LATL02000148 17,748 13
LATL02000313 17,704 14
LATL02000059 17,682 17
LATL02000206 17,641 19
LATL02000146 17,547 11
LATL02000231 17,454 11
LATL02000029 17,298 10
LATL02000268 17,291 15
LATL02000136 17,290 17
LATL02000192 17,256 8
LATL02000335 17,191 11
LATL02000333 17,115 7
LATL02000205 17,027 9
LATL02000078 16,996 14
LATL02000102 16,982 13
LATL02000169 16,973 6
LATL02000098 16,947 15
LATL02000010 16,752 15
LATL02000244 16,749 15
LATL02000316 16,627 10
LATL02000007 16,598 15
LATL02000319 16,517 16
LATL02000302 16,489 15
LATL02000338 16,487 12
LATL02000066 16,435 13
LATL02000151 16,394 16
LATL02000134 16,383 16
LATL02000297 16,363 10
LATL02000108 16,350 13
LATL02000061 16,228 17
LATL02000346 16,209 14
LATL02000034 16,093 16
LATL02000185 16,018 17
LATL02000309 15,738 14
LATL02000351 15,717 9
LATL02000322 15,715 13
LATL02000005 15,692 15
LATL02000348 15,621 10
LATL02000046 15,516 11
LATL02000142 15,465 13
LATL02000033 15,430 11
LATL02000223 15,417 10
LATL02000121 15,396 13
LATL02000287 15,207 9
LATL02000111 15,161 15
LATL02000293 15,136 11
LATL02000256 15,135 17
LATL02000191 15,131 10
LATL02000137 15,112 12
LATL02000342 15,057 13
LATL02000247 14,964 8
LATL02000097 14,949 15
LATL02000260 14,857 11
LATL02000277 14,829 8
LATL02000197 14,824 10
LATL02000324 14,696 5
LATL02000106 14,685 13
LATL02000087 14,668 10
LATL02000077 14,550 15
LATL02000202 14,481 5
LATL02000336 14,417 12
LATL02000032 14,357 14
LATL02000060 14,186 14
LATL02000047 14,167 9
LATL02000262 14,057 7
LATL02000358 14,016 12
LATL02000048 13,970 5
LATL02000145 13,964 9
LATL02000280 13,708 7
LATL02000037 13,657 11
LATL02000107 13,620 13
LATL02000251 13,619 7
LATL02000074 13,601 6
LATL02000227 13,547 10
LATL02000254 13,415 16
LATL02000210 13,334 7
LATL02000049 13,242 14
LATL02000017 13,238 15
LATL02000289 13,214 7
LATL02000189 12,970 13
LATL02000183 12,949 10
LATL02000188 12,862 7
LATL02000295 12,767 9
LATL02000198 12,703 14
LATL02000240 12,697 8
LATL02000019 12,567 8
LATL02000027 12,554 7
LATL02000354 12,552 13
LATL02000228 12,542 12
LATL02000305 12,518 8
LATL02000328 12,431 11
LATL02000013 12,396 13
LATL02000217 12,386 12
LATL02000035 12,358 8
LATL02000318 12,269 8
LATL02000116 12,142 9
LATL02000052 12,070 7
LATL02000321 12,040 8
LATL02000042 12,015 6
LATL02000067 11,998 10
LATL02000018 11,989 4
LATL02000274 11,943 11
LATL02000089 11,794 7
LATL02000236 11,776 7
LATL02000139 11,665 12
LATL02000271 11,635 13
LATL02000173 11,630 6
LATL02000182 11,623 10
LATL02000174 11,525 10
LATL02000162 11,522 10
LATL02000022 11,513 10
LATL02000270 11,457 8
LATL02000199 11,450 9
LATL02000285 11,396 7
LATL02000282 11,249 11
LATL02000166 11,204 9
LATL02000165 11,137 6
LATL02000290 11,091 9
LATL02000021 11,077 10
LATL02000288 11,025 11
LATL02000215 10,987 6
LATL02000054 10,967 13
LATL02000132 10,961 9
LATL02000207 10,941 9
LATL02000334 10,883 4
LATL02000171 10,828 10
LATL02000239 10,797 10
LATL02000015 10,778 8
LATL02000105 10,736 4
LATL02000117 10,576 6
LATL02000064 10,563 9
LATL02000043 10,534 2
LATL02000341 10,499 4
LATL02000008 10,474 8
LATL02000331 10,334 7
LATL02000352 10,144 10
LATL02000012 10,105 3
LATL02000211 10,043 8
LATL02000104 9,954 5
LATL02000179 9,950 0
LATL02000020 9,844 9
LATL02000072 9,762 6
LATL02000219 9,720 6
LATL02000158 9,709 8
LATL02000155 9,673 3
LATL02000299 9,650 8
LATL02000030 9,601 9
LATL02000266 9,480 4
LATL02000115 9,383 4
LATL02000153 9,280 7
LATL02000281 9,269 9
LATL02000249 9,258 6
LATL02000163 9,220 8
LATL02000259 9,138 9
LATL02000306 9,072 5
LATL02000330 8,947 12
LATL02000161 8,864 10
LATL02000041 8,859 6
LATL02000031 8,825 5
LATL02000180 8,752 7
LATL02000248 8,708 7
LATL02000099 8,677 12
LATL02000291 8,616 8
LATL02000246 8,599 7
LATL02000001 8,531 6
LATL02000360 8,478 9
LATL02000195 8,396 8
LATL02000028 8,333 8
LATL02000026 8,297 8
LATL02000085 8,296 6
LATL02000250 8,277 4
LATL02000296 8,262 6
LATL02000327 8,151 9
LATL02000100 8,084 5
LATL02000110 8,077 5
LATL02000130 8,068 2
LATL02000343 7,994 8
LATL02000050 7,968 4
LATL02000159 7,962 6
LATL02000326 7,956 9
LATL02000124 7,839 7
LATL02000076 7,818 7
LATL02000125 7,806 2
LATL02000147 7,800 9
LATL02000315 7,686 7
LATL02000150 7,680 9
LATL02000175 7,667 5
LATL02000109 7,605 6
LATL02000329 7,599 8
LATL02000103 7,598 6
LATL02000038 7,593 6
LATL02000320 7,229 7
LATL02000129 7,142 4
LATL02000201 6,098 3
LATL02000208 5,972 7
LATL02000257 5,821 4
LATL02000160 5,775 3
LATL02000278 5,428 11
LATL02000340 4,562 4
LATL02000344 3,118 2
LATL02000176 1,449 2
LATL02000172 1,216 1
LATL02000325 649 1
Total 7,314,117 5,504
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000972705.2

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000972705.2/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000972705.2/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000972705.2/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000972705.2/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000972705.2/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000972705.2/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000972705.2/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000972705.2/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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