cyanobase » Chroococcales cyanobacterium CENA595

Chroococcales cyanobacterium CENA595

Summary

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Data source name GCA_000952155.1
Full name Chroococcales cyanobacterium CENA595 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales.

Genome Information

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Chromosomes
Name Size (bp) Genes
JYON01000001 518,663 464
JYON01000002 325,594 268
JYON01000003 291,564 241
JYON01000004 224,266 190
JYON01000005 215,004 162
JYON01000006 202,331 163
JYON01000007 197,833 190
JYON01000008 194,267 152
JYON01000009 190,094 164
JYON01000010 173,760 146
JYON01000011 156,240 125
JYON01000012 149,310 112
JYON01000013 137,005 140
JYON01000014 134,290 128
JYON01000015 120,904 90
JYON01000016 116,213 101
JYON01000017 112,240 89
JYON01000018 104,778 70
JYON01000019 104,201 92
JYON01000020 104,038 56
JYON01000021 103,732 80
JYON01000022 88,357 69
JYON01000023 80,358 77
JYON01000024 80,028 73
JYON01000025 75,014 77
JYON01000026 73,364 66
JYON01000027 67,977 57
JYON01000028 64,778 51
JYON01000029 64,552 57
JYON01000030 58,924 42
JYON01000031 58,696 44
JYON01000032 56,216 50
JYON01000033 55,969 52
JYON01000034 55,793 55
JYON01000035 54,525 46
JYON01000036 54,037 34
JYON01000037 53,420 55
JYON01000038 43,598 33
JYON01000039 37,806 31
JYON01000040 32,217 27
JYON01000041 29,401 26
JYON01000042 28,640 21
JYON01000043 28,092 18
JYON01000044 26,260 20
JYON01000045 23,808 18
JYON01000046 16,187 16
JYON01000047 16,126 23
JYON01000048 12,795 13
JYON01000049 12,491 8
JYON01000050 10,673 8
JYON01000051 6,471 4
JYON01000052 4,943 8
JYON01000053 4,747 5
JYON01000054 3,430 5
JYON01000055 3,162 2
JYON01000056 2,030 3
JYON01000057 1,744 3
JYON01000058 1,001 1
JYON01000059 995 1
JYON01000060 751 3
Total 5,265,703 4,425
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000952155.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000952155.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000952155.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000952155.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000952155.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000952155.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000952155.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000952155.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000952155.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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