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cyanobase » Mastigocladus laminosus UU774

Mastigocladus laminosus UU774

Summary

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Data source name GCA_000934435.1
Full name Mastigocladus laminosus UU774
Taxonomy Lineage Cyanobacteria; Stigonematales; Mastigocladus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JXIJ01000130 1,015,353 667
JXIJ01000127 484,718 285
JXIJ01000153 377,570 267
JXIJ01000103 334,112 217
JXIJ01000078 325,000 211
JXIJ01000150 283,309 181
JXIJ01000028 266,820 192
JXIJ01000050 262,593 170
JXIJ01000143 218,108 122
JXIJ01000174 217,897 156
JXIJ01000090 211,809 151
JXIJ01000014 201,561 121
JXIJ01000015 196,693 143
JXIJ01000167 189,126 123
JXIJ01000036 188,047 119
JXIJ01000070 186,369 116
JXIJ01000073 169,344 93
JXIJ01000107 167,878 107
JXIJ01000008 162,689 82
JXIJ01000035 145,427 100
JXIJ01000005 119,942 59
JXIJ01000072 115,578 57
JXIJ01000139 102,020 74
JXIJ01000166 96,612 70
JXIJ01000108 91,709 60
JXIJ01000132 88,142 41
JXIJ01000089 84,611 33
JXIJ01000069 79,371 76
JXIJ01000038 69,230 47
JXIJ01000016 68,519 48
JXIJ01000094 65,706 38
JXIJ01000030 59,630 34
JXIJ01000091 57,224 45
JXIJ01000057 55,963 44
JXIJ01000154 52,322 35
JXIJ01000020 51,171 19
JXIJ01000173 48,111 55
JXIJ01000115 45,253 21
JXIJ01000031 44,809 34
JXIJ01000007 44,111 30
JXIJ01000140 39,803 20
JXIJ01000171 36,631 21
JXIJ01000104 36,196 17
JXIJ01000060 25,154 14
JXIJ01000088 24,479 21
JXIJ01000123 23,656 22
JXIJ01000039 22,252 20
JXIJ01000162 20,533 23
JXIJ01000141 20,140 22
JXIJ01000095 20,098 19
JXIJ01000160 19,778 19
JXIJ01000149 19,194 18
JXIJ01000047 18,393 18
JXIJ01000012 17,692 19
JXIJ01000084 17,411 17
JXIJ01000121 17,052 14
JXIJ01000092 16,919 15
JXIJ01000099 16,258 17
JXIJ01000164 15,883 18
JXIJ01000151 15,583 13
JXIJ01000032 15,134 19
JXIJ01000145 14,782 21
JXIJ01000046 14,571 18
JXIJ01000100 14,494 6
JXIJ01000064 14,016 13
JXIJ01000117 13,969 15
JXIJ01000156 13,579 16
JXIJ01000131 13,534 6
JXIJ01000137 13,427 15
JXIJ01000018 13,407 14
JXIJ01000065 13,125 18
JXIJ01000163 12,025 11
JXIJ01000006 11,837 15
JXIJ01000052 11,788 14
JXIJ01000074 11,558 18
JXIJ01000112 11,544 12
JXIJ01000082 11,379 12
JXIJ01000125 11,374 13
JXIJ01000059 11,117 10
JXIJ01000172 10,843 10
JXIJ01000066 10,788 13
JXIJ01000122 10,414 14
JXIJ01000053 10,374 11
JXIJ01000097 10,127 6
JXIJ01000019 10,118 9
JXIJ01000087 10,102 6
JXIJ01000086 10,058 9
JXIJ01000110 10,002 8
JXIJ01000114 9,990 10
JXIJ01000136 9,962 13
JXIJ01000043 9,941 12
JXIJ01000024 9,877 11
JXIJ01000147 9,831 10
JXIJ01000063 9,815 11
JXIJ01000067 9,815 2
JXIJ01000011 9,793 9
JXIJ01000079 9,770 12
JXIJ01000093 9,697 10
JXIJ01000105 9,643 6
JXIJ01000045 9,634 12
JXIJ01000023 9,595 10
JXIJ01000158 9,525 12
JXIJ01000102 9,492 10
JXIJ01000138 9,436 8
JXIJ01000119 9,402 13
JXIJ01000041 9,382 9
JXIJ01000085 9,346 9
JXIJ01000022 9,340 10
JXIJ01000026 9,323 10
JXIJ01000002 9,230 10
JXIJ01000061 9,159 13
JXIJ01000076 9,152 11
JXIJ01000098 9,128 7
JXIJ01000111 9,097 12
JXIJ01000025 9,050 4
JXIJ01000081 8,995 8
JXIJ01000144 8,915 11
JXIJ01000128 8,892 12
JXIJ01000148 8,785 11
JXIJ01000096 8,751 7
JXIJ01000037 8,749 8
JXIJ01000142 8,730 7
JXIJ01000135 8,723 6
JXIJ01000161 8,713 5
JXIJ01000048 8,712 8
JXIJ01000075 8,712 8
JXIJ01000109 8,706 11
JXIJ01000133 8,678 8
JXIJ01000169 8,665 7
JXIJ01000120 8,655 10
JXIJ01000146 8,643 5
JXIJ01000155 8,570 11
JXIJ01000170 8,556 9
JXIJ01000124 8,533 8
JXIJ01000106 8,483 8
JXIJ01000080 8,467 10
JXIJ01000083 8,395 6
JXIJ01000009 8,349 12
JXIJ01000034 8,335 7
JXIJ01000027 8,307 4
JXIJ01000010 8,251 9
JXIJ01000159 8,207 7
JXIJ01000118 8,169 9
JXIJ01000157 8,102 8
JXIJ01000134 8,086 11
JXIJ01000062 8,083 6
JXIJ01000101 8,068 6
JXIJ01000044 8,014 7
JXIJ01000001 7,907 11
JXIJ01000116 7,826 6
JXIJ01000054 7,819 8
JXIJ01000042 7,761 4
JXIJ01000165 7,746 7
JXIJ01000040 7,715 7
JXIJ01000033 7,661 3
JXIJ01000077 7,593 12
JXIJ01000152 7,589 7
JXIJ01000021 7,589 6
JXIJ01000003 7,579 3
JXIJ01000129 7,554 7
JXIJ01000071 7,534 9
JXIJ01000051 7,507 8
JXIJ01000113 7,487 6
JXIJ01000168 7,459 8
JXIJ01000049 7,450 2
JXIJ01000055 7,387 10
JXIJ01000056 7,299 9
JXIJ01000017 7,291 9
JXIJ01000029 7,264 7
JXIJ01000068 7,188 8
JXIJ01000126 7,151 7
JXIJ01000058 7,140 6
JXIJ01000013 7,133 4
JXIJ01000004 7,081 6
Total 8,560,182 5,978
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000934435.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000934435.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000934435.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000934435.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000934435.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000934435.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000934435.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000934435.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000934435.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000934435.1/genes/interpro.txt (File format)

MicrobeBase