cyanobase » Scytonema tolypothrichoides VB-61278

Scytonema tolypothrichoides VB-61278

Summary

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Data source name GCA_000828085.1
Full name Scytonema tolypothrichoides VB-61278 External
Taxonomy Lineage Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.

Genome Information

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Chromosomes
Name Size (bp) Genes
JXCA01000006 1,436,913 1,065
JXCA01000011 1,041,673 767
JXCA01000014 914,713 696
JXCA01000008 659,030 452
JXCA01000010 650,664 456
JXCA01000012 636,301 454
JXCA01000005 556,160 409
JXCA01000015 502,309 392
JXCA01000009 482,348 362
JXCA01000018 251,158 174
JXCA01000002 181,637 102
JXCA01000013 121,028 91
JXCA01000054 87,093 58
JXCA01000090 81,921 58
JXCA01000025 69,344 66
JXCA01000087 52,723 35
JXCA01000083 51,194 39
JXCA01000030 49,009 47
JXCA01000034 48,387 33
JXCA01000076 48,340 20
JXCA01000110 47,465 30
JXCA01000079 45,649 24
JXCA01000055 41,702 32
JXCA01000088 40,347 19
JXCA01000047 36,439 33
JXCA01000078 33,951 30
JXCA01000001 32,421 29
JXCA01000061 29,164 28
JXCA01000031 29,087 14
JXCA01000035 27,619 15
JXCA01000052 26,540 14
JXCA01000120 25,294 13
JXCA01000045 24,742 27
JXCA01000130 24,540 18
JXCA01000107 23,737 15
JXCA01000016 22,964 16
JXCA01000036 22,844 20
JXCA01000049 22,788 21
JXCA01000064 22,774 14
JXCA01000193 21,915 13
JXCA01000040 21,837 12
JXCA01000115 21,585 9
JXCA01000073 21,531 13
JXCA01000042 21,147 14
JXCA01000071 19,932 16
JXCA01000176 19,724 13
JXCA01000051 17,912 18
JXCA01000029 17,893 17
JXCA01000004 17,842 21
JXCA01000038 17,565 13
JXCA01000159 17,263 12
JXCA01000007 16,747 16
JXCA01000023 16,352 15
JXCA01000184 15,442 6
JXCA01000158 15,117 7
JXCA01000063 14,705 13
JXCA01000117 14,505 13
JXCA01000099 14,406 17
JXCA01000109 14,227 6
JXCA01000188 14,155 6
JXCA01000209 14,022 6
JXCA01000152 13,972 17
JXCA01000105 13,915 9
JXCA01000210 13,320 9
JXCA01000039 13,187 10
JXCA01000121 13,103 17
JXCA01000095 12,850 7
JXCA01000022 12,401 15
JXCA01000179 12,037 8
JXCA01000125 11,993 3
JXCA01000044 11,923 9
JXCA01000132 11,814 4
JXCA01000027 11,624 8
JXCA01000112 11,518 9
JXCA01000118 11,470 7
JXCA01000101 11,118 11
JXCA01000208 10,884 3
JXCA01000189 10,758 5
JXCA01000020 10,737 5
JXCA01000136 10,696 8
JXCA01000081 10,351 12
JXCA01000149 10,159 6
JXCA01000207 9,881 6
JXCA01000168 9,803 6
JXCA01000213 9,781 4
JXCA01000144 9,725 7
JXCA01000127 9,450 5
JXCA01000206 9,424 12
JXCA01000199 9,376 7
JXCA01000003 9,375 7
JXCA01000170 9,367 7
JXCA01000165 9,190 7
JXCA01000151 8,930 5
JXCA01000048 8,913 9
JXCA01000085 8,794 4
JXCA01000191 8,784 5
JXCA01000181 8,722 7
JXCA01000092 8,536 4
JXCA01000066 8,517 4
JXCA01000141 8,277 5
JXCA01000198 8,262 3
JXCA01000178 8,160 3
JXCA01000021 8,111 7
JXCA01000180 7,965 3
JXCA01000108 7,957 8
JXCA01000197 7,929 6
JXCA01000041 7,916 7
JXCA01000032 7,900 9
JXCA01000097 7,753 5
JXCA01000068 7,752 7
JXCA01000163 7,746 5
JXCA01000046 7,703 11
JXCA01000143 7,613 6
JXCA01000065 7,525 8
JXCA01000160 7,494 5
JXCA01000169 7,483 3
JXCA01000028 7,442 11
JXCA01000175 7,425 2
JXCA01000017 7,416 4
JXCA01000050 7,410 4
JXCA01000033 7,344 7
JXCA01000098 7,290 6
JXCA01000162 7,235 4
JXCA01000024 7,025 2
JXCA01000094 6,955 3
JXCA01000093 6,921 5
JXCA01000019 6,907 6
JXCA01000153 6,855 6
JXCA01000086 6,814 2
JXCA01000084 6,754 6
JXCA01000195 6,707 4
JXCA01000171 6,646 4
JXCA01000139 6,565 3
JXCA01000164 6,561 4
JXCA01000145 6,520 5
JXCA01000067 6,509 4
JXCA01000133 6,508 4
JXCA01000103 6,504 3
JXCA01000167 6,495 4
JXCA01000146 6,492 3
JXCA01000077 6,492 4
JXCA01000128 6,421 2
JXCA01000074 6,364 4
JXCA01000116 6,340 5
JXCA01000148 6,322 4
JXCA01000062 6,320 7
JXCA01000155 6,256 7
JXCA01000060 6,236 5
JXCA01000123 6,217 5
JXCA01000140 6,201 4
JXCA01000129 6,201 3
JXCA01000212 6,191 4
JXCA01000196 6,141 5
JXCA01000177 6,129 6
JXCA01000058 6,089 7
JXCA01000190 6,056 3
JXCA01000201 5,941 4
JXCA01000185 5,935 5
JXCA01000075 5,927 3
JXCA01000082 5,874 1
JXCA01000166 5,861 4
JXCA01000122 5,858 2
JXCA01000205 5,855 3
JXCA01000204 5,789 2
JXCA01000187 5,774 3
JXCA01000161 5,768 3
JXCA01000135 5,751 4
JXCA01000211 5,716 2
JXCA01000091 5,711 1
JXCA01000026 5,706 5
JXCA01000142 5,698 3
JXCA01000131 5,682 3
JXCA01000194 5,662 5
JXCA01000137 5,647 2
JXCA01000186 5,643 5
JXCA01000119 5,606 3
JXCA01000192 5,590 5
JXCA01000070 5,585 4
JXCA01000043 5,555 7
JXCA01000114 5,536 4
JXCA01000072 5,530 4
JXCA01000053 5,526 5
JXCA01000059 5,455 2
JXCA01000172 5,452 4
JXCA01000106 5,435 3
JXCA01000056 5,431 6
JXCA01000157 5,380 6
JXCA01000154 5,366 4
JXCA01000214 5,349 2
JXCA01000156 5,337 2
JXCA01000113 5,300 4
JXCA01000089 5,287 4
JXCA01000069 5,281 7
JXCA01000126 5,279 3
JXCA01000057 5,249 4
JXCA01000037 5,247 3
JXCA01000202 5,235 3
JXCA01000174 5,225 4
JXCA01000150 5,205 4
JXCA01000147 5,200 3
JXCA01000200 5,181 2
JXCA01000124 5,170 4
JXCA01000134 5,160 4
JXCA01000096 5,160 3
JXCA01000102 5,066 3
JXCA01000111 5,055 2
JXCA01000182 5,053 2
JXCA01000173 5,040 1
JXCA01000080 5,036 4
JXCA01000104 5,031 4
JXCA01000138 5,016 4
JXCA01000100 5,016 4
JXCA01000183 5,005 4
JXCA01000203 5,004 4
Total 10,008,488 7,239
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000828085.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000828085.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000828085.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000828085.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000828085.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000828085.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000828085.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000828085.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000828085.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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