cyanobase » Tolypothrix campylonemoides VB511288

Tolypothrix campylonemoides VB511288

Summary

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Data source name GCA_000828075.1
Full name Tolypothrix campylonemoides VB511288 External
Taxonomy Lineage Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.

Genome Information

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Chromosomes
Name Size (bp) Genes
JXCB01000004 1,728,859 1,174
JXCB01000008 1,701,383 1,298
JXCB01000012 1,301,449 993
JXCB01000007 1,097,626 840
JXCB01000009 850,800 599
JXCB01000010 667,439 491
JXCB01000002 297,094 219
JXCB01000013 263,526 191
JXCB01000005 237,118 184
JXCB01000011 143,715 87
JXCB01000020 109,637 65
JXCB01000014 96,308 85
JXCB01000034 73,269 81
JXCB01000023 51,614 30
JXCB01000001 45,799 34
JXCB01000021 43,572 35
JXCB01000067 35,588 24
JXCB01000109 35,396 28
JXCB01000015 33,905 25
JXCB01000066 31,076 22
JXCB01000080 30,028 20
JXCB01000006 29,798 19
JXCB01000100 28,693 21
JXCB01000040 27,814 25
JXCB01000029 27,435 31
JXCB01000121 25,154 22
JXCB01000060 23,332 19
JXCB01000043 23,288 21
JXCB01000070 22,525 19
JXCB01000003 22,507 22
JXCB01000041 21,506 19
JXCB01000049 21,349 17
JXCB01000017 21,266 26
JXCB01000135 21,030 13
JXCB01000115 20,548 20
JXCB01000102 20,412 12
JXCB01000069 20,407 13
JXCB01000050 19,917 16
JXCB01000016 19,310 22
JXCB01000059 19,216 24
JXCB01000120 19,023 13
JXCB01000077 18,895 11
JXCB01000055 18,853 10
JXCB01000063 18,757 16
JXCB01000051 18,717 12
JXCB01000018 18,596 12
JXCB01000114 18,427 14
JXCB01000094 18,128 12
JXCB01000082 17,820 10
JXCB01000111 17,697 11
JXCB01000092 17,359 10
JXCB01000053 17,270 18
JXCB01000085 16,978 13
JXCB01000104 16,788 14
JXCB01000073 16,752 12
JXCB01000057 16,713 14
JXCB01000131 16,566 24
JXCB01000079 16,518 11
JXCB01000052 16,508 9
JXCB01000123 16,508 14
JXCB01000112 16,388 14
JXCB01000061 16,366 16
JXCB01000065 16,341 18
JXCB01000062 16,296 10
JXCB01000027 16,207 17
JXCB01000076 15,952 10
JXCB01000113 15,826 10
JXCB01000064 15,732 13
JXCB01000022 15,716 11
JXCB01000090 15,350 9
JXCB01000103 15,108 11
JXCB01000081 15,095 13
JXCB01000108 15,046 12
JXCB01000095 14,956 11
JXCB01000026 14,840 14
JXCB01000105 14,813 13
JXCB01000044 14,773 12
JXCB01000133 14,735 17
JXCB01000116 14,656 11
JXCB01000078 14,456 9
JXCB01000037 14,408 20
JXCB01000128 14,261 12
JXCB01000091 14,123 13
JXCB01000019 13,976 17
JXCB01000054 13,853 10
JXCB01000101 13,727 13
JXCB01000075 13,438 10
JXCB01000129 13,391 17
JXCB01000083 13,285 11
JXCB01000045 13,205 18
JXCB01000074 13,102 9
JXCB01000099 13,008 5
JXCB01000087 12,887 10
JXCB01000071 12,819 9
JXCB01000084 12,684 6
JXCB01000047 12,616 9
JXCB01000134 12,523 11
JXCB01000058 12,503 7
JXCB01000088 12,489 12
JXCB01000130 12,401 11
JXCB01000024 12,326 15
JXCB01000098 12,299 8
JXCB01000127 12,155 10
JXCB01000038 12,131 14
JXCB01000124 12,123 10
JXCB01000025 11,914 12
JXCB01000093 11,892 9
JXCB01000068 11,832 7
JXCB01000048 11,616 9
JXCB01000118 11,588 13
JXCB01000036 11,563 9
JXCB01000117 11,559 11
JXCB01000042 11,519 10
JXCB01000030 11,341 9
JXCB01000125 11,214 10
JXCB01000107 11,210 9
JXCB01000089 11,066 10
JXCB01000106 10,914 8
JXCB01000033 10,878 12
JXCB01000056 10,836 8
JXCB01000096 10,788 9
JXCB01000032 10,774 10
JXCB01000035 10,744 11
JXCB01000039 10,660 9
JXCB01000046 10,655 8
JXCB01000110 10,654 5
JXCB01000028 10,630 9
JXCB01000126 10,604 11
JXCB01000119 10,555 8
JXCB01000097 10,491 8
JXCB01000132 10,475 5
JXCB01000122 10,423 12
JXCB01000072 10,389 10
JXCB01000031 10,237 6
JXCB01000086 10,190 9
Total 10,627,177 7,980
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000828075.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000828075.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000828075.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000828075.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000828075.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000828075.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000828075.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000828075.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000828075.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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