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cyanobase » Hassallia byssoidea VB512170

Hassallia byssoidea VB512170

Summary

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Data source name GCA_000817785.1
Full name Hassallia byssoidea VB512170
Taxonomy Lineage Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.

Genome Information

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Chromosomes
Name Size (bp) Genes
JTCM01000043 1,860,517 1,436
JTCM01000029 1,738,295 1,456
JTCM01000042 1,418,449 1,121
JTCM01000038 1,388,993 1,225
JTCM01000011 1,254,578 951
JTCM01000002 1,215,602 847
JTCM01000018 1,112,754 906
JTCM01000037 982,395 783
JTCM01000057 506,779 380
JTCM01000016 402,369 326
JTCM01000036 388,280 328
JTCM01000022 171,211 139
JTCM01000021 143,632 84
JTCM01000053 83,836 69
JTCM01000009 79,697 66
JTCM01000028 37,637 30
JTCM01000060 24,899 2
JTCM01000012 19,504 19
JTCM01000027 17,247 15
JTCM01000048 13,276 17
JTCM01000004 12,124 10
JTCM01000045 10,685 6
JTCM01000001 9,091 4
JTCM01000025 8,765 3
JTCM01000047 7,796 2
JTCM01000034 7,678 4
JTCM01000023 7,627 4
JTCM01000019 7,469 3
JTCM01000005 7,418 3
JTCM01000032 7,395 4
JTCM01000051 7,251 5
JTCM01000007 7,004 2
JTCM01000003 6,657 4
JTCM01000049 6,492 6
JTCM01000026 6,280 4
JTCM01000059 5,866 3
JTCM01000041 5,455 5
JTCM01000010 5,377 2
JTCM01000056 5,342 4
JTCM01000061 5,331 1
JTCM01000015 5,218 5
JTCM01000013 5,123 2
JTCM01000033 4,974 2
JTCM01000054 4,812 1
JTCM01000008 4,707 1
JTCM01000046 4,662 2
JTCM01000039 4,642 4
JTCM01000020 4,407 2
JTCM01000030 4,267 4
JTCM01000035 4,230 4
JTCM01000058 4,230 4
JTCM01000014 4,220 3
JTCM01000017 4,086 3
JTCM01000062 3,919 0
JTCM01000006 3,748 2
JTCM01000044 3,727 3
JTCM01000031 3,600 2
JTCM01000055 3,442 2
JTCM01000052 3,295 3
JTCM01000040 3,006 2
JTCM01000050 3,001 2
JTCM01000024 2,162 4
Total 13,096,531 10,336
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000817785.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000817785.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000817785.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000817785.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000817785.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000817785.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000817785.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000817785.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000817785.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000817785.1/genes/interpro.txt (File format)

MicrobeBase