cyanobase » Lyngbya confervoides BDU141951

Lyngbya confervoides BDU141951

Summary

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Data source name GCA_000817775.1
Full name Lyngbya confervoides BDU141951 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.

Genome Information

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Chromosomes
Name Size (bp) Genes
JTHE01000274 5,207,129 3,663
JTHE01000261 599,698 426
JTHE01000128 143,009 114
JTHE01000206 52,188 35
JTHE01000085 48,597 30
JTHE01000155 37,036 24
JTHE01000023 34,994 21
JTHE01000100 27,934 12
JTHE01000123 27,908 20
JTHE01000096 27,607 22
JTHE01000235 27,446 13
JTHE01000293 26,540 12
JTHE01000270 26,167 15
JTHE01000112 25,922 24
JTHE01000036 25,841 16
JTHE01000098 24,788 15
JTHE01000171 23,639 16
JTHE01000149 23,537 16
JTHE01000221 23,236 10
JTHE01000027 22,715 12
JTHE01000213 22,518 12
JTHE01000161 21,969 13
JTHE01000228 21,169 20
JTHE01000055 20,921 11
JTHE01000126 20,798 9
JTHE01000136 20,504 17
JTHE01000267 19,805 16
JTHE01000296 19,028 15
JTHE01000024 18,498 14
JTHE01000272 18,396 18
JTHE01000033 18,384 18
JTHE01000231 18,179 12
JTHE01000167 17,839 11
JTHE01000262 17,586 10
JTHE01000159 17,067 10
JTHE01000056 17,006 7
JTHE01000101 16,837 10
JTHE01000146 16,651 12
JTHE01000074 16,408 13
JTHE01000165 16,333 13
JTHE01000281 16,192 7
JTHE01000067 16,057 11
JTHE01000234 15,907 7
JTHE01000214 15,766 12
JTHE01000135 15,608 14
JTHE01000044 15,554 10
JTHE01000182 15,457 5
JTHE01000175 15,324 11
JTHE01000071 15,180 8
JTHE01000265 14,965 5
JTHE01000093 14,670 15
JTHE01000211 14,631 6
JTHE01000295 14,472 9
JTHE01000081 14,294 8
JTHE01000125 13,943 11
JTHE01000122 13,821 10
JTHE01000102 13,694 5
JTHE01000068 13,683 11
JTHE01000245 13,365 10
JTHE01000183 13,237 9
JTHE01000249 12,733 8
JTHE01000163 12,707 4
JTHE01000094 12,684 11
JTHE01000216 12,608 7
JTHE01000291 12,605 6
JTHE01000189 12,461 13
JTHE01000283 12,436 14
JTHE01000070 12,262 8
JTHE01000114 12,180 8
JTHE01000153 12,050 8
JTHE01000104 11,899 11
JTHE01000037 11,788 13
JTHE01000242 11,638 12
JTHE01000020 11,600 4
JTHE01000173 11,582 5
JTHE01000141 11,369 12
JTHE01000028 11,236 7
JTHE01000196 11,064 13
JTHE01000255 10,939 7
JTHE01000275 10,856 8
JTHE01000066 10,725 4
JTHE01000139 10,583 5
JTHE01000131 10,443 5
JTHE01000204 10,436 12
JTHE01000253 10,360 4
JTHE01000186 10,318 2
JTHE01000039 10,285 10
JTHE01000287 10,264 6
JTHE01000286 10,180 11
JTHE01000076 10,158 7
JTHE01000212 10,146 12
JTHE01000007 10,083 10
JTHE01000164 10,068 5
JTHE01000064 10,008 5
JTHE01000006 9,959 6
JTHE01000240 9,927 5
JTHE01000285 9,836 6
JTHE01000140 9,830 5
JTHE01000111 9,807 10
JTHE01000150 9,622 4
JTHE01000218 9,609 10
JTHE01000266 9,609 6
JTHE01000172 9,543 5
JTHE01000138 9,535 4
JTHE01000069 9,535 9
JTHE01000075 9,519 4
JTHE01000095 9,458 9
JTHE01000011 9,346 5
JTHE01000298 9,327 4
JTHE01000263 9,306 7
JTHE01000222 9,119 3
JTHE01000045 8,999 2
JTHE01000269 8,989 6
JTHE01000258 8,877 9
JTHE01000244 8,872 2
JTHE01000121 8,859 5
JTHE01000223 8,831 6
JTHE01000130 8,692 8
JTHE01000151 8,677 2
JTHE01000002 8,645 5
JTHE01000010 8,645 8
JTHE01000168 8,627 5
JTHE01000097 8,599 9
JTHE01000193 8,585 6
JTHE01000003 8,577 6
JTHE01000208 8,571 6
JTHE01000259 8,558 4
JTHE01000042 8,552 9
JTHE01000105 8,476 5
JTHE01000174 8,445 4
JTHE01000147 8,361 7
JTHE01000080 8,316 9
JTHE01000188 8,278 9
JTHE01000046 8,249 8
JTHE01000271 8,249 6
JTHE01000154 8,219 5
JTHE01000162 8,185 6
JTHE01000195 8,140 7
JTHE01000197 8,060 9
JTHE01000014 8,048 4
JTHE01000179 8,008 9
JTHE01000160 7,758 3
JTHE01000063 7,754 5
JTHE01000227 7,740 10
JTHE01000106 7,588 5
JTHE01000051 7,568 7
JTHE01000053 7,560 4
JTHE01000110 7,546 6
JTHE01000059 7,536 3
JTHE01000142 7,485 4
JTHE01000232 7,407 7
JTHE01000282 7,394 4
JTHE01000152 7,355 6
JTHE01000237 7,314 6
JTHE01000029 7,303 3
JTHE01000021 7,213 5
JTHE01000032 7,182 5
JTHE01000019 7,131 4
JTHE01000137 7,113 8
JTHE01000250 7,092 4
JTHE01000257 7,072 7
JTHE01000132 7,068 10
JTHE01000241 7,021 4
JTHE01000290 6,922 7
JTHE01000109 6,891 6
JTHE01000038 6,833 5
JTHE01000157 6,830 3
JTHE01000048 6,797 7
JTHE01000247 6,612 5
JTHE01000072 6,593 2
JTHE01000288 6,578 2
JTHE01000127 6,568 3
JTHE01000148 6,508 8
JTHE01000090 6,480 1
JTHE01000026 6,476 8
JTHE01000022 6,465 5
JTHE01000260 6,462 3
JTHE01000190 6,405 4
JTHE01000199 6,374 7
JTHE01000158 6,340 8
JTHE01000203 6,329 6
JTHE01000092 6,319 4
JTHE01000086 6,293 7
JTHE01000156 6,285 10
JTHE01000181 6,254 4
JTHE01000180 6,214 6
JTHE01000060 6,202 4
JTHE01000145 6,133 4
JTHE01000279 6,111 4
JTHE01000280 6,106 6
JTHE01000009 6,105 4
JTHE01000170 6,078 6
JTHE01000115 6,039 5
JTHE01000124 6,011 5
JTHE01000246 5,982 8
JTHE01000052 5,962 2
JTHE01000292 5,898 2
JTHE01000200 5,886 1
JTHE01000294 5,837 1
JTHE01000116 5,836 3
JTHE01000268 5,799 2
JTHE01000089 5,799 9
JTHE01000192 5,780 3
JTHE01000057 5,779 6
JTHE01000088 5,756 4
JTHE01000034 5,754 6
JTHE01000226 5,754 3
JTHE01000205 5,700 5
JTHE01000184 5,681 6
JTHE01000143 5,662 3
JTHE01000120 5,626 1
JTHE01000243 5,624 3
JTHE01000073 5,601 4
JTHE01000289 5,541 6
JTHE01000025 5,540 4
JTHE01000169 5,535 4
JTHE01000273 5,517 5
JTHE01000062 5,476 3
JTHE01000030 5,464 6
JTHE01000077 5,392 3
JTHE01000178 5,338 5
JTHE01000047 5,319 2
JTHE01000248 5,316 3
JTHE01000284 5,313 6
JTHE01000236 5,289 3
JTHE01000035 5,274 6
JTHE01000015 5,273 6
JTHE01000084 5,251 5
JTHE01000103 5,232 2
JTHE01000087 5,219 4
JTHE01000210 5,219 6
JTHE01000297 5,209 3
JTHE01000144 5,191 4
JTHE01000217 5,188 3
JTHE01000224 5,145 4
JTHE01000198 5,106 2
JTHE01000233 5,085 4
JTHE01000230 5,067 4
JTHE01000119 5,064 4
JTHE01000219 5,063 3
JTHE01000058 5,060 4
JTHE01000220 5,058 5
JTHE01000016 5,053 4
JTHE01000129 5,005 7
JTHE01000013 4,973 3
JTHE01000194 4,936 4
JTHE01000238 4,925 3
JTHE01000185 4,904 3
JTHE01000201 4,899 1
JTHE01000012 4,891 3
JTHE01000043 4,820 3
JTHE01000004 4,805 4
JTHE01000133 4,783 4
JTHE01000107 4,712 3
JTHE01000061 4,709 5
JTHE01000017 4,702 3
JTHE01000049 4,701 6
JTHE01000264 4,693 4
JTHE01000079 4,689 5
JTHE01000225 4,688 3
JTHE01000018 4,671 3
JTHE01000099 4,655 1
JTHE01000001 4,638 1
JTHE01000118 4,637 2
JTHE01000187 4,626 3
JTHE01000209 4,622 7
JTHE01000054 4,604 7
JTHE01000252 4,600 3
JTHE01000202 4,538 2
JTHE01000041 4,523 3
JTHE01000191 4,490 3
JTHE01000008 4,486 2
JTHE01000176 4,481 1
JTHE01000277 4,479 4
JTHE01000229 4,430 5
JTHE01000113 4,410 4
JTHE01000276 4,393 3
JTHE01000256 4,353 5
JTHE01000117 4,312 3
JTHE01000091 4,291 2
JTHE01000083 4,231 2
JTHE01000040 4,180 3
JTHE01000177 4,157 2
JTHE01000031 4,151 1
JTHE01000065 4,139 4
JTHE01000251 4,092 4
JTHE01000207 4,082 3
JTHE01000005 4,044 2
JTHE01000254 3,943 3
JTHE01000278 3,929 3
JTHE01000134 3,868 1
JTHE01000108 3,845 0
JTHE01000239 3,785 3
JTHE01000050 3,752 1
JTHE01000215 3,697 2
JTHE01000082 3,676 2
JTHE01000166 3,625 6
JTHE01000078 3,620 5
Total 8,799,693 6,175
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000817775.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000817775.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000817775.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000817775.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000817775.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000817775.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000817775.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000817775.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000817775.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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