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cyanobase » Aphanocapsa montana BDHKU210001

Aphanocapsa montana BDHKU210001

Summary

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Data source name GCA_000817745.1
Full name Aphanocapsa montana BDHKU210001
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanocapsa.

Genome Information

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Chromosomes
Name Size (bp) Genes
JTJD01000271 5,058,360 3,579
JTJD01000258 599,666 430
JTJD01000122 146,514 118
JTJD01000203 145,857 113
JTJD01000081 89,270 42
JTJD01000022 76,657 62
JTJD01000150 76,475 38
JTJD01000117 68,146 38
JTJD01000291 65,597 26
JTJD01000232 62,146 21
JTJD01000092 61,630 25
JTJD01000267 60,684 26
JTJD01000210 59,984 35
JTJD01000096 59,676 37
JTJD01000094 58,119 29
JTJD01000217 56,141 36
JTJD01000144 54,968 26
JTJD01000107 53,438 27
JTJD01000035 51,030 25
JTJD01000166 50,640 34
JTJD01000026 47,783 25
JTJD01000225 47,469 26
JTJD01000156 47,314 21
JTJD01000120 47,143 31
JTJD01000294 45,266 20
JTJD01000053 45,051 29
JTJD01000264 44,829 22
JTJD01000130 43,222 21
JTJD01000097 42,191 19
JTJD01000023 40,889 26
JTJD01000228 40,780 27
JTJD01000054 39,650 14
JTJD01000269 39,050 15
JTJD01000140 37,553 16
JTJD01000154 37,325 20
JTJD01000032 36,655 18
JTJD01000129 35,691 25
JTJD01000279 35,393 13
JTJD01000259 35,271 22
JTJD01000160 34,914 28
JTJD01000069 34,810 26
JTJD01000262 34,653 22
JTJD01000177 34,530 16
JTJD01000116 34,269 19
JTJD01000162 34,131 21
JTJD01000211 34,105 25
JTJD01000293 33,683 24
JTJD01000089 33,629 30
JTJD01000170 33,311 19
JTJD01000065 33,048 19
JTJD01000078 33,047 19
JTJD01000072 32,330 23
JTJD01000231 31,837 18
JTJD01000242 31,497 25
JTJD01000090 31,255 19
JTJD01000043 31,062 19
JTJD01000066 31,010 17
JTJD01000208 30,841 14
JTJD01000106 30,539 21
JTJD01000179 30,280 20
JTJD01000135 30,278 15
JTJD01000212 30,266 21
JTJD01000068 30,121 15
JTJD01000119 30,052 22
JTJD01000192 29,847 11
JTJD01000098 29,329 14
JTJD01000289 27,723 11
JTJD01000027 27,142 13
JTJD01000158 26,675 19
JTJD01000019 26,634 22
JTJD01000209 26,157 17
JTJD01000185 25,099 11
JTJD01000148 25,051 16
JTJD01000062 24,951 13
JTJD01000100 24,893 13
JTJD01000252 24,716 14
JTJD01000145 24,617 9
JTJD01000281 24,526 14
JTJD01000168 24,514 16
JTJD01000285 24,202 15
JTJD01000125 24,197 12
JTJD01000239 24,144 14
JTJD01000108 24,081 6
JTJD01000134 23,301 10
JTJD01000246 23,272 10
JTJD01000159 23,244 18
JTJD01000077 23,188 14
JTJD01000010 23,185 7
JTJD01000036 23,093 12
JTJD01000250 22,772 12
JTJD01000133 22,741 14
JTJD01000038 22,392 17
JTJD01000284 22,308 14
JTJD01000283 21,995 8
JTJD01000132 21,834 9
JTJD01000214 21,722 10
JTJD01000167 21,705 14
JTJD01000201 21,384 8
JTJD01000263 21,357 9
JTJD01000273 21,113 13
JTJD01000074 20,976 7
JTJD01000237 20,868 13
JTJD01000064 20,605 15
JTJD01000067 20,535 14
JTJD01000007 20,449 4
JTJD01000093 20,208 12
JTJD01000006 20,201 9
JTJD01000182 19,547 10
JTJD01000266 19,236 16
JTJD01000115 19,106 9
JTJD01000101 19,010 8
JTJD01000260 18,942 6
JTJD01000044 18,637 13
JTJD01000051 18,246 9
JTJD01000124 18,031 12
JTJD01000091 17,936 7
JTJD01000146 17,818 12
JTJD01000255 17,769 12
JTJD01000180 17,503 8
JTJD01000009 17,092 6
JTJD01000184 16,912 8
JTJD01000013 16,784 8
JTJD01000204 16,713 15
JTJD01000169 16,397 5
JTJD01000256 16,393 9
JTJD01000218 16,293 8
JTJD01000045 16,292 8
JTJD01000296 16,223 10
JTJD01000219 16,031 9
JTJD01000244 15,915 12
JTJD01000193 15,901 10
JTJD01000189 15,895 11
JTJD01000142 15,838 9
JTJD01000041 15,752 6
JTJD01000241 15,717 7
JTJD01000028 15,633 9
JTJD01000280 15,602 11
JTJD01000003 15,584 11
JTJD01000075 15,215 11
JTJD01000105 15,204 6
JTJD01000224 15,164 9
JTJD01000049 15,143 8
JTJD01000174 15,095 8
JTJD01000002 15,038 6
JTJD01000073 14,965 8
JTJD01000229 14,866 6
JTJD01000152 14,798 6
JTJD01000037 14,611 6
JTJD01000104 14,540 15
JTJD01000131 14,451 7
JTJD01000268 14,358 6
JTJD01000136 14,357 8
JTJD01000163 14,339 9
JTJD01000061 14,276 7
JTJD01000157 14,102 6
JTJD01000126 14,079 10
JTJD01000234 13,901 12
JTJD01000020 13,769 3
JTJD01000147 13,753 4
JTJD01000047 13,719 11
JTJD01000195 13,359 10
JTJD01000121 13,337 7
JTJD01000018 13,261 6
JTJD01000102 13,216 5
JTJD01000191 13,154 7
JTJD01000055 13,106 19
JTJD01000109 13,022 7
JTJD01000254 12,950 5
JTJD01000247 12,928 8
JTJD01000029 12,903 10
JTJD01000085 12,816 9
JTJD01000149 12,706 8
JTJD01000057 12,333 8
JTJD01000238 12,132 10
JTJD01000257 11,798 5
JTJD01000143 11,724 5
JTJD01000021 11,662 7
JTJD01000277 11,655 5
JTJD01000200 11,323 4
JTJD01000288 11,170 6
JTJD01000151 11,029 12
JTJD01000084 10,751 9
JTJD01000070 10,630 7
JTJD01000118 10,557 4
JTJD01000088 10,407 5
JTJD01000202 10,373 3
JTJD01000278 10,365 5
JTJD01000031 10,308 8
JTJD01000082 10,282 9
JTJD01000243 10,242 2
JTJD01000025 10,189 9
JTJD01000165 10,173 4
JTJD01000286 10,163 12
JTJD01000175 10,055 8
JTJD01000155 10,043 2
JTJD01000086 10,042 5
JTJD01000207 9,885 9
JTJD01000058 9,719 7
JTJD01000153 9,713 5
JTJD01000033 9,683 6
JTJD01000137 9,607 2
JTJD01000110 9,595 6
JTJD01000222 9,569 4
JTJD01000114 9,564 8
JTJD01000292 9,528 5
JTJD01000186 9,489 4
JTJD01000206 9,489 4
JTJD01000240 9,307 8
JTJD01000213 9,226 7
JTJD01000008 9,048 5
JTJD01000173 8,958 6
JTJD01000046 8,760 2
JTJD01000040 8,754 3
JTJD01000290 8,735 4
JTJD01000017 8,716 5
JTJD01000221 8,571 5
JTJD01000034 8,571 10
JTJD01000265 8,556 5
JTJD01000050 8,556 9
JTJD01000071 8,275 4
JTJD01000024 8,123 3
JTJD01000176 7,882 7
JTJD01000245 7,858 7
JTJD01000042 7,813 3
JTJD01000230 7,797 5
JTJD01000059 7,777 5
JTJD01000282 7,710 5
JTJD01000099 7,693 6
JTJD01000001 7,665 3
JTJD01000198 7,324 3
JTJD01000127 7,285 4
JTJD01000083 7,103 4
JTJD01000014 7,089 2
JTJD01000261 6,946 5
JTJD01000226 6,929 4
JTJD01000138 6,924 3
JTJD01000253 6,823 6
JTJD01000048 6,791 3
JTJD01000197 6,676 6
JTJD01000011 6,593 2
JTJD01000139 6,483 2
JTJD01000220 6,457 2
JTJD01000199 6,333 2
JTJD01000080 6,309 4
JTJD01000076 6,222 4
JTJD01000164 6,205 6
JTJD01000095 6,167 5
JTJD01000015 6,094 3
JTJD01000178 6,028 3
JTJD01000205 5,993 2
JTJD01000128 5,967 4
JTJD01000276 5,935 4
JTJD01000111 5,894 2
JTJD01000190 5,873 5
JTJD01000270 5,859 3
JTJD01000194 5,856 3
JTJD01000012 5,852 3
JTJD01000216 5,754 1
JTJD01000123 5,728 4
JTJD01000113 5,722 3
JTJD01000181 5,675 3
JTJD01000188 5,635 5
JTJD01000295 5,577 3
JTJD01000005 5,481 3
JTJD01000249 5,472 3
JTJD01000161 5,438 3
JTJD01000274 5,396 6
JTJD01000183 5,387 2
JTJD01000235 5,335 4
JTJD01000287 5,312 3
JTJD01000112 5,279 1
JTJD01000233 5,235 3
JTJD01000060 5,224 5
JTJD01000187 5,223 2
JTJD01000103 5,189 4
JTJD01000016 5,106 3
JTJD01000196 5,095 4
JTJD01000251 5,034 5
JTJD01000141 5,023 1
JTJD01000087 5,022 4
JTJD01000171 5,001 6
JTJD01000052 4,908 1
JTJD01000215 4,891 4
JTJD01000079 4,884 4
JTJD01000056 4,866 5
JTJD01000227 4,850 2
JTJD01000039 4,829 2
JTJD01000275 4,755 6
JTJD01000272 4,739 6
JTJD01000248 4,666 2
JTJD01000172 4,641 2
JTJD01000030 4,612 2
JTJD01000004 4,606 2
JTJD01000063 4,562 3
JTJD01000223 4,538 4
JTJD01000236 4,530 2
Total 11,500,044 7,352
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000817745.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000817745.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000817745.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000817745.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000817745.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000817745.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000817745.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000817745.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000817745.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000817745.1/genes/interpro.txt (File format)

MicrobeBase