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cyanobase » Scytonema millei VB511283

Scytonema millei VB511283

Summary

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Data source name GCA_000817735.1
Full name Scytonema millei VB511283
Taxonomy Lineage Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.

Genome Information

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Chromosomes
Name Size (bp) Genes
JTJC01000086 3,887,589 3,019
JTJC01000084 2,155,310 1,709
JTJC01000104 389,615 362
JTJC01000049 293,876 207
JTJC01000069 256,045 226
JTJC01000018 224,037 159
JTJC01000033 203,340 152
JTJC01000118 186,398 156
JTJC01000102 178,861 162
JTJC01000008 175,215 105
JTJC01000097 173,478 139
JTJC01000058 170,725 143
JTJC01000009 170,017 111
JTJC01000071 163,590 124
JTJC01000045 163,059 94
JTJC01000023 162,717 154
JTJC01000114 154,073 133
JTJC01000043 133,405 84
JTJC01000005 117,178 116
JTJC01000022 107,639 80
JTJC01000044 104,246 86
JTJC01000002 102,558 107
JTJC01000093 96,482 103
JTJC01000072 85,253 66
JTJC01000113 79,389 65
JTJC01000088 78,547 75
JTJC01000042 77,470 58
JTJC01000010 71,208 64
JTJC01000057 68,528 58
JTJC01000019 67,332 41
JTJC01000025 63,201 53
JTJC01000062 57,751 37
JTJC01000105 57,658 19
JTJC01000059 52,926 41
JTJC01000035 51,022 46
JTJC01000117 49,348 44
JTJC01000013 48,710 45
JTJC01000115 45,087 23
JTJC01000004 42,764 32
JTJC01000020 38,424 43
JTJC01000094 37,490 38
JTJC01000112 35,639 15
JTJC01000070 34,853 26
JTJC01000109 32,509 24
JTJC01000077 32,202 26
JTJC01000056 31,076 11
JTJC01000036 25,720 31
JTJC01000026 24,608 19
JTJC01000111 24,164 10
JTJC01000082 22,222 23
JTJC01000021 21,266 9
JTJC01000053 20,221 20
JTJC01000095 19,254 14
JTJC01000063 17,134 16
JTJC01000040 16,739 6
JTJC01000108 15,755 10
JTJC01000101 15,118 14
JTJC01000031 15,003 12
JTJC01000087 14,374 3
JTJC01000103 14,305 15
JTJC01000007 14,181 15
JTJC01000080 13,638 13
JTJC01000067 12,951 4
JTJC01000075 9,686 4
JTJC01000041 9,563 2
JTJC01000099 9,482 8
JTJC01000081 9,316 2
JTJC01000028 8,915 3
JTJC01000027 8,691 3
JTJC01000038 8,479 5
JTJC01000079 8,417 4
JTJC01000061 8,380 3
JTJC01000050 8,362 2
JTJC01000030 8,250 3
JTJC01000015 8,220 2
JTJC01000039 8,192 9
JTJC01000016 8,151 2
JTJC01000085 8,021 2
JTJC01000078 7,878 8
JTJC01000074 7,862 3
JTJC01000003 7,707 9
JTJC01000068 7,598 4
JTJC01000092 7,475 3
JTJC01000106 7,111 8
JTJC01000091 7,018 4
JTJC01000011 6,892 5
JTJC01000060 6,727 5
JTJC01000110 5,739 2
JTJC01000034 5,675 12
JTJC01000046 5,253 6
JTJC01000083 4,974 1
JTJC01000052 4,733 6
JTJC01000065 4,474 5
JTJC01000012 4,410 6
JTJC01000055 4,207 7
JTJC01000076 4,175 3
JTJC01000090 3,939 4
JTJC01000006 3,823 4
JTJC01000029 3,774 3
JTJC01000107 3,617 1
JTJC01000054 3,577 3
JTJC01000014 3,393 5
JTJC01000001 3,310 4
JTJC01000048 3,307 4
JTJC01000037 3,285 4
JTJC01000017 3,284 5
JTJC01000066 3,245 4
JTJC01000051 3,221 4
JTJC01000116 3,176 4
JTJC01000098 3,161 2
JTJC01000100 3,152 4
JTJC01000064 3,131 3
JTJC01000096 3,089 2
JTJC01000024 3,065 4
JTJC01000089 3,059 2
JTJC01000032 3,057 4
JTJC01000047 3,043 3
JTJC01000073 3,012 2
Total 11,627,246 9,141
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000817735.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000817735.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000817735.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000817735.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000817735.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000817735.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000817735.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000817735.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000817735.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000817735.1/genes/interpro.txt (File format)

MicrobeBase