cyanobase » Aphanizomenon flos-aquae 2012/KM1/D3

Aphanizomenon flos-aquae 2012/KM1/D3

Summary

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Data source name GCA_000789435.1
Full name Aphanizomenon flos-aquae 2012/KM1/D3 External
Taxonomy Lineage Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.

Genome Information

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Chromosomes
Name Size (bp) Genes
JSDP01000205 120,451 100
JSDP01000164 77,219 76
JSDP01000185 69,111 32
JSDP01000058 67,290 59
JSDP01000243 63,657 49
JSDP01000162 59,835 56
JSDP01000198 57,522 46
JSDP01000132 56,038 43
JSDP01000119 54,156 45
JSDP01000078 52,425 38
JSDP01000143 52,087 38
JSDP01000253 50,832 37
JSDP01000255 50,403 37
JSDP01000026 49,060 51
JSDP01000057 47,266 34
JSDP01000210 45,230 30
JSDP01000005 45,170 40
JSDP01000001 45,084 34
JSDP01000090 44,516 52
JSDP01000158 43,971 48
JSDP01000150 43,942 40
JSDP01000222 43,618 23
JSDP01000166 43,129 28
JSDP01000071 43,078 29
JSDP01000146 43,012 28
JSDP01000275 41,423 37
JSDP01000240 40,117 25
JSDP01000169 39,294 30
JSDP01000209 37,261 32
JSDP01000257 37,208 30
JSDP01000144 36,643 27
JSDP01000007 36,573 25
JSDP01000216 36,538 26
JSDP01000018 35,600 28
JSDP01000268 34,850 27
JSDP01000031 34,790 33
JSDP01000025 34,772 21
JSDP01000323 34,534 27
JSDP01000098 34,525 22
JSDP01000099 34,369 34
JSDP01000312 34,268 29
JSDP01000320 34,097 18
JSDP01000202 33,471 20
JSDP01000104 33,430 27
JSDP01000187 33,053 30
JSDP01000154 32,848 24
JSDP01000042 32,114 17
JSDP01000307 32,027 21
JSDP01000070 31,609 27
JSDP01000128 31,339 12
JSDP01000281 31,337 28
JSDP01000289 31,068 33
JSDP01000271 30,019 20
JSDP01000140 29,742 19
JSDP01000050 29,734 24
JSDP01000011 29,724 24
JSDP01000141 29,608 21
JSDP01000015 29,480 21
JSDP01000121 29,323 28
JSDP01000118 29,158 21
JSDP01000220 28,367 31
JSDP01000034 28,074 27
JSDP01000081 27,885 25
JSDP01000226 27,757 22
JSDP01000010 27,240 28
JSDP01000230 27,006 14
JSDP01000175 26,992 20
JSDP01000229 26,572 27
JSDP01000261 26,208 23
JSDP01000279 26,084 19
JSDP01000067 26,078 21
JSDP01000064 25,593 17
JSDP01000049 25,535 17
JSDP01000072 25,418 23
JSDP01000092 24,965 22
JSDP01000035 24,822 25
JSDP01000194 24,491 18
JSDP01000156 24,322 15
JSDP01000310 23,933 19
JSDP01000124 23,901 18
JSDP01000074 23,756 12
JSDP01000163 23,513 16
JSDP01000269 23,506 20
JSDP01000083 23,173 16
JSDP01000236 23,150 14
JSDP01000195 23,077 18
JSDP01000094 23,032 22
JSDP01000127 22,931 10
JSDP01000293 22,826 16
JSDP01000171 22,692 17
JSDP01000192 22,610 17
JSDP01000213 21,900 22
JSDP01000300 21,887 17
JSDP01000088 21,760 18
JSDP01000224 21,380 12
JSDP01000165 21,029 13
JSDP01000059 20,867 14
JSDP01000112 20,401 12
JSDP01000016 20,250 13
JSDP01000191 20,181 20
JSDP01000136 20,112 15
JSDP01000186 20,102 17
JSDP01000114 20,072 11
JSDP01000238 19,992 9
JSDP01000193 19,981 16
JSDP01000151 19,976 17
JSDP01000221 19,242 15
JSDP01000101 19,145 13
JSDP01000075 19,066 13
JSDP01000080 18,965 3
JSDP01000159 18,546 15
JSDP01000233 18,342 10
JSDP01000318 18,248 14
JSDP01000182 18,189 8
JSDP01000242 18,003 11
JSDP01000206 17,822 9
JSDP01000314 17,818 12
JSDP01000066 17,785 10
JSDP01000008 17,534 13
JSDP01000055 17,523 20
JSDP01000085 16,788 18
JSDP01000091 16,275 6
JSDP01000189 16,265 15
JSDP01000036 16,090 11
JSDP01000006 15,967 4
JSDP01000235 15,853 14
JSDP01000282 15,824 10
JSDP01000054 15,599 14
JSDP01000308 15,589 13
JSDP01000316 15,373 11
JSDP01000252 15,085 9
JSDP01000019 15,083 7
JSDP01000259 14,992 15
JSDP01000211 14,954 14
JSDP01000024 14,923 11
JSDP01000073 14,901 10
JSDP01000237 14,771 17
JSDP01000317 14,754 15
JSDP01000250 14,588 19
JSDP01000207 14,500 6
JSDP01000223 14,481 9
JSDP01000225 14,347 13
JSDP01000135 14,335 13
JSDP01000288 14,300 15
JSDP01000183 14,253 11
JSDP01000137 14,106 11
JSDP01000061 14,055 10
JSDP01000046 14,018 10
JSDP01000030 13,852 15
JSDP01000167 13,728 14
JSDP01000138 13,663 15
JSDP01000278 13,654 7
JSDP01000048 13,495 9
JSDP01000266 13,419 20
JSDP01000295 13,277 11
JSDP01000115 13,218 12
JSDP01000322 13,195 5
JSDP01000234 13,183 7
JSDP01000283 12,829 16
JSDP01000264 12,465 10
JSDP01000093 12,330 14
JSDP01000204 12,226 12
JSDP01000254 12,214 8
JSDP01000117 12,203 10
JSDP01000105 12,181 13
JSDP01000129 12,155 5
JSDP01000265 12,098 8
JSDP01000152 11,955 6
JSDP01000274 11,884 9
JSDP01000027 11,841 7
JSDP01000303 11,822 12
JSDP01000100 11,793 9
JSDP01000311 11,739 4
JSDP01000051 11,647 8
JSDP01000044 11,644 6
JSDP01000184 11,460 9
JSDP01000053 11,427 4
JSDP01000082 11,326 13
JSDP01000157 11,239 9
JSDP01000004 11,218 4
JSDP01000301 11,207 13
JSDP01000276 11,187 14
JSDP01000296 11,161 12
JSDP01000179 11,041 8
JSDP01000297 10,912 6
JSDP01000014 10,789 5
JSDP01000102 10,741 10
JSDP01000177 10,721 9
JSDP01000200 10,529 3
JSDP01000107 10,371 9
JSDP01000208 10,288 9
JSDP01000079 10,205 10
JSDP01000037 10,129 9
JSDP01000251 10,096 5
JSDP01000023 10,025 7
JSDP01000196 9,979 10
JSDP01000201 9,968 9
JSDP01000077 9,963 6
JSDP01000084 9,917 7
JSDP01000245 9,907 10
JSDP01000309 9,850 9
JSDP01000130 9,845 10
JSDP01000324 9,770 4
JSDP01000181 9,687 9
JSDP01000002 9,642 7
JSDP01000123 9,606 3
JSDP01000174 9,584 6
JSDP01000256 9,575 8
JSDP01000294 9,574 4
JSDP01000219 9,568 10
JSDP01000122 9,526 8
JSDP01000056 9,493 9
JSDP01000270 9,291 9
JSDP01000021 9,170 6
JSDP01000148 9,099 7
JSDP01000244 9,046 8
JSDP01000305 8,977 8
JSDP01000111 8,918 9
JSDP01000190 8,905 8
JSDP01000116 8,877 8
JSDP01000017 8,866 7
JSDP01000249 8,713 4
JSDP01000040 8,680 9
JSDP01000043 8,670 6
JSDP01000041 8,644 10
JSDP01000247 8,598 4
JSDP01000217 8,546 9
JSDP01000287 8,445 7
JSDP01000180 8,430 4
JSDP01000086 8,417 7
JSDP01000280 8,371 7
JSDP01000134 8,154 9
JSDP01000062 8,151 5
JSDP01000178 8,092 7
JSDP01000273 8,081 10
JSDP01000039 8,078 5
JSDP01000290 7,965 7
JSDP01000110 7,878 9
JSDP01000319 7,796 8
JSDP01000248 7,700 7
JSDP01000149 7,696 6
JSDP01000203 7,686 5
JSDP01000292 7,577 7
JSDP01000325 7,568 5
JSDP01000262 7,478 4
JSDP01000133 7,471 4
JSDP01000089 7,417 7
JSDP01000076 7,371 4
JSDP01000106 7,344 5
JSDP01000145 7,298 6
JSDP01000246 7,090 4
JSDP01000291 7,067 3
JSDP01000139 7,046 5
JSDP01000125 7,039 7
JSDP01000313 6,949 7
JSDP01000199 6,928 5
JSDP01000315 6,921 6
JSDP01000068 6,862 7
JSDP01000227 6,748 5
JSDP01000028 6,680 6
JSDP01000286 6,651 7
JSDP01000228 6,569 3
JSDP01000176 6,483 2
JSDP01000060 6,480 4
JSDP01000302 6,433 5
JSDP01000113 6,431 3
JSDP01000155 6,292 6
JSDP01000197 6,216 6
JSDP01000097 6,186 6
JSDP01000020 6,140 6
JSDP01000126 6,125 6
JSDP01000161 6,119 2
JSDP01000231 6,063 6
JSDP01000170 5,826 4
JSDP01000172 5,791 3
JSDP01000277 5,790 2
JSDP01000299 5,757 5
JSDP01000038 5,732 6
JSDP01000095 5,691 8
JSDP01000120 5,664 3
JSDP01000032 5,569 3
JSDP01000033 5,542 8
JSDP01000218 5,521 5
JSDP01000022 5,494 3
JSDP01000212 5,448 5
JSDP01000012 5,421 4
JSDP01000045 5,359 4
JSDP01000052 5,282 4
JSDP01000321 5,281 2
JSDP01000239 5,103 6
JSDP01000173 5,094 3
JSDP01000142 4,969 8
JSDP01000063 4,962 3
JSDP01000304 4,933 3
JSDP01000131 4,908 3
JSDP01000260 4,902 3
JSDP01000087 4,819 6
JSDP01000065 4,744 3
JSDP01000009 4,671 3
JSDP01000153 4,671 5
JSDP01000306 4,635 5
JSDP01000069 4,624 7
JSDP01000168 4,613 5
JSDP01000188 4,578 3
JSDP01000298 4,548 3
JSDP01000214 4,542 4
JSDP01000160 4,518 3
JSDP01000096 4,475 6
JSDP01000013 4,464 4
JSDP01000258 4,372 7
JSDP01000263 4,301 4
JSDP01000285 4,300 3
JSDP01000003 4,292 4
JSDP01000272 4,163 4
JSDP01000215 4,112 7
JSDP01000108 4,056 4
JSDP01000267 4,051 4
JSDP01000147 3,967 1
JSDP01000029 3,932 3
JSDP01000232 3,899 1
JSDP01000047 3,886 1
JSDP01000284 3,875 3
JSDP01000241 3,866 6
JSDP01000109 3,471 2
JSDP01000103 3,325 4
Total 5,741,771 4,469
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000789435.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000789435.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000789435.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000789435.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000789435.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000789435.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000789435.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000789435.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000789435.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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