cyanobase » Neosynechococcus sphagnicola sy1

Neosynechococcus sphagnicola sy1

Summary

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Data source name GCA_000775285.1
Full name Neosynechococcus sphagnicola sy1 External
Taxonomy Lineage Cyanobacteria; Oscillatoriophycideae; Chroococcales; Neosynechococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JJML01000017 235,975 150
JJML01000007 213,296 145
JJML01000016 211,313 132
JJML01000002 183,050 128
JJML01000008 180,124 89
JJML01000003 169,182 108
JJML01000026 147,498 78
JJML01000001 136,391 98
JJML01000015 133,531 98
JJML01000009 126,111 83
JJML01000004 118,560 76
JJML01000019 118,200 67
JJML01000029 115,427 66
JJML01000041 88,830 53
JJML01000014 86,780 45
JJML01000042 85,467 45
JJML01000006 81,579 50
JJML01000018 80,642 34
JJML01000025 77,119 52
JJML01000033 73,238 42
JJML01000020 72,476 42
JJML01000024 70,883 53
JJML01000037 60,850 39
JJML01000021 56,782 37
JJML01000046 55,939 43
JJML01000044 54,890 28
JJML01000005 53,241 20
JJML01000023 51,982 29
JJML01000047 47,557 30
JJML01000053 47,255 37
JJML01000022 44,423 24
JJML01000063 43,635 36
JJML01000034 38,011 28
JJML01000051 37,904 26
JJML01000036 37,783 33
JJML01000055 33,839 25
JJML01000028 33,641 22
JJML01000013 33,283 10
JJML01000043 33,044 19
JJML01000035 30,550 19
JJML01000064 29,875 29
JJML01000030 29,543 28
JJML01000073 29,535 16
JJML01000067 27,155 24
JJML01000031 26,155 25
JJML01000052 25,881 15
JJML01000050 25,369 11
JJML01000057 24,609 14
JJML01000012 22,903 14
JJML01000060 22,758 10
JJML01000039 22,703 16
JJML01000027 21,129 15
JJML01000069 20,683 15
JJML01000010 20,165 8
JJML01000040 18,969 13
JJML01000068 16,574 9
JJML01000062 16,504 12
JJML01000045 16,250 13
JJML01000075 16,120 14
JJML01000059 16,083 9
JJML01000061 16,002 19
JJML01000011 15,810 15
JJML01000076 14,875 6
JJML01000054 14,397 14
JJML01000088 13,705 14
JJML01000038 12,711 4
JJML01000032 12,696 10
JJML01000058 12,174 5
JJML01000074 11,497 10
JJML01000071 10,434 6
JJML01000066 9,806 9
JJML01000080 9,591 3
JJML01000056 8,837 4
JJML01000078 8,688 9
JJML01000072 8,378 8
JJML01000077 8,102 5
JJML01000048 7,010 7
JJML01000084 7,003 8
JJML01000087 6,651 7
JJML01000083 6,295 11
JJML01000065 6,268 6
JJML01000090 5,941 6
JJML01000085 4,844 3
JJML01000086 4,308 4
JJML01000070 3,867 1
JJML01000092 3,675 2
JJML01000094 3,359 2
JJML01000096 3,026 4
JJML01000091 2,938 4
JJML01000095 2,539 6
JJML01000105 2,530 3
JJML01000081 2,490 2
JJML01000106 2,131 2
JJML01000089 1,885 3
JJML01000093 1,760 1
JJML01000097 1,430 1
JJML01000113 937 2
JJML01000107 935 0
JJML01000079 898 1
JJML01000102 889 2
JJML01000100 848 0
JJML01000118 833 2
JJML01000104 774 1
JJML01000099 752 0
JJML01000082 727 1
JJML01000114 687 0
JJML01000101 677 0
JJML01000111 644 0
JJML01000108 639 0
JJML01000112 611 0
JJML01000109 610 1
JJML01000049 559 1
JJML01000103 537 0
JJML01000098 504 0
JJML01000115 419 0
JJML01000110 376 0
JJML01000117 361 0
JJML01000116 254 0
Total 4,331,368 2,784
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000775285.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000775285.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000775285.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000775285.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000775285.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000775285.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000775285.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000775285.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000775285.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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