cyanobase » Prochlorococcus sp. SS52

Prochlorococcus sp. SS52

Summary

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Data source name GCA_000760375.1
Full name Prochlorococcus sp. SS52 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNBE01000018 264,302 288
JNBE01000019 247,267 292
JNBE01000008 225,497 265
JNBE01000004 133,520 146
JNBE01000015 124,224 165
JNBE01000013 120,629 114
JNBE01000002 98,566 114
JNBE01000017 89,224 101
JNBE01000006 78,347 82
JNBE01000007 75,975 67
JNBE01000009 71,412 69
JNBE01000010 38,757 72
JNBE01000014 31,987 50
JNBE01000011 31,427 30
JNBE01000016 26,932 30
JNBE01000012 25,354 40
JNBE01000005 17,777 15
JNBE01000003 15,360 31
JNBE01000020 15,336 23
JNBE01000001 12,609 9
JNBE01000022 6,472 6
JNBE01000021 3,079 2
Total 1,754,053 2,011
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760375.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760375.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760375.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760375.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760375.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760375.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760375.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760375.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760375.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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