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cyanobase » Prochlorococcus sp. MIT 0703

Prochlorococcus sp. MIT 0703

Summary

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Data source name GCA_000760335.1
Full name Prochlorococcus sp. MIT 0703
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNBC01000044 295,777 315
JNBC01000043 197,750 203
JNBC01000011 138,726 183
JNBC01000033 121,765 151
JNBC01000041 116,656 123
JNBC01000017 107,248 117
JNBC01000031 93,454 108
JNBC01000024 87,728 129
JNBC01000035 84,519 97
JNBC01000010 81,186 93
JNBC01000012 73,916 89
JNBC01000013 68,240 78
JNBC01000019 66,928 66
JNBC01000037 58,488 65
JNBC01000023 54,592 73
JNBC01000016 54,353 71
JNBC01000009 51,390 56
JNBC01000008 48,674 53
JNBC01000027 47,959 50
JNBC01000002 45,107 62
JNBC01000026 44,130 52
JNBC01000001 42,610 73
JNBC01000042 42,469 46
JNBC01000014 40,810 47
JNBC01000018 39,702 37
JNBC01000028 37,214 45
JNBC01000034 30,276 69
JNBC01000039 28,529 25
JNBC01000030 27,893 32
JNBC01000038 27,837 26
JNBC01000004 26,074 30
JNBC01000022 20,758 21
JNBC01000020 20,482 32
JNBC01000045 19,572 17
JNBC01000006 19,149 24
JNBC01000040 18,747 35
JNBC01000005 16,999 21
JNBC01000029 13,873 16
JNBC01000015 13,681 16
JNBC01000007 12,856 15
JNBC01000036 12,528 18
JNBC01000021 12,500 18
JNBC01000025 12,349 12
JNBC01000003 10,729 13
JNBC01000032 10,058 18
JNBC01000049 9,645 24
JNBC01000061 8,982 8
JNBC01000058 8,443 18
JNBC01000057 8,374 11
JNBC01000060 7,988 9
JNBC01000051 6,075 7
JNBC01000050 6,037 8
JNBC01000054 5,408 7
JNBC01000055 4,184 4
JNBC01000047 2,804 1
JNBC01000059 2,524 3
JNBC01000056 1,958 3
JNBC01000053 1,865 2
JNBC01000052 1,732 3
JNBC01000046 1,612 2
JNBC01000048 1,145 1
Total 2,575,057 3,051
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760335.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760335.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760335.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760335.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760335.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760335.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760335.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760335.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760335.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760335.1/genes/interpro.txt (File format)

MicrobeBase