cyanobase » Prochlorococcus sp. MIT 0702

Prochlorococcus sp. MIT 0702

Summary

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Data source name GCA_000760315.1
Full name Prochlorococcus sp. MIT 0702 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNBB01000047 345,502 394
JNBB01000046 197,666 196
JNBB01000012 189,764 213
JNBB01000034 116,697 124
JNBB01000044 91,912 122
JNBB01000017 87,824 129
JNBB01000029 87,226 95
JNBB01000023 84,423 98
JNBB01000036 82,023 165
JNBB01000011 76,101 88
JNBB01000013 71,978 71
JNBB01000014 70,074 82
JNBB01000019 66,913 66
JNBB01000037 58,481 68
JNBB01000022 54,320 70
JNBB01000016 51,349 58
JNBB01000010 48,784 54
JNBB01000009 47,978 49
JNBB01000025 45,539 63
JNBB01000002 42,362 40
JNBB01000024 40,798 47
JNBB01000001 40,149 46
JNBB01000045 37,265 48
JNBB01000015 37,170 45
JNBB01000018 36,894 50
JNBB01000026 34,013 41
JNBB01000035 31,691 52
JNBB01000040 29,873 30
JNBB01000028 28,535 24
JNBB01000039 27,824 29
JNBB01000005 23,044 20
JNBB01000021 21,274 25
JNBB01000006 21,229 20
JNBB01000027 20,515 32
JNBB01000008 19,632 18
JNBB01000004 19,008 25
JNBB01000030 18,821 31
JNBB01000031 16,499 15
JNBB01000041 14,769 16
JNBB01000032 13,866 16
JNBB01000042 13,681 17
JNBB01000033 12,920 18
JNBB01000020 12,637 13
JNBB01000048 12,389 20
JNBB01000003 11,669 27
JNBB01000038 11,370 14
JNBB01000007 10,705 13
JNBB01000043 10,091 18
JNBB01000057 6,130 7
JNBB01000055 5,795 8
JNBB01000050 5,497 5
JNBB01000059 3,367 7
JNBB01000053 2,784 1
JNBB01000049 2,564 3
JNBB01000061 2,204 4
JNBB01000051 1,969 3
JNBB01000052 1,924 2
JNBB01000060 1,656 2
JNBB01000056 1,557 3
JNBB01000054 1,214 2
JNBB01000058 1,149 1
Total 2,583,057 3,063
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760315.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760315.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760315.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760315.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760315.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760315.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760315.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760315.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760315.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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