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cyanobase » Prochlorococcus sp. MIT 0701

Prochlorococcus sp. MIT 0701

Summary

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Data source name GCA_000760295.1
Full name Prochlorococcus sp. MIT 0701
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNBA01000039 414,082 462
JNBA01000027 203,120 228
JNBA01000036 197,637 202
JNBA01000024 116,715 123
JNBA01000029 103,083 138
JNBA01000009 87,829 130
JNBA01000010 87,219 97
JNBA01000014 84,703 169
JNBA01000030 84,463 95
JNBA01000012 77,493 93
JNBA01000007 69,849 81
JNBA01000020 67,197 67
JNBA01000002 63,820 72
JNBA01000018 58,446 66
JNBA01000001 54,639 69
JNBA01000037 54,332 70
JNBA01000011 54,088 64
JNBA01000021 48,752 52
JNBA01000028 48,002 50
JNBA01000023 43,625 55
JNBA01000032 42,407 38
JNBA01000013 40,780 48
JNBA01000003 37,379 48
JNBA01000017 36,974 50
JNBA01000015 34,461 41
JNBA01000042 29,855 29
JNBA01000005 28,519 26
JNBA01000033 27,835 27
JNBA01000022 26,865 45
JNBA01000006 22,291 34
JNBA01000016 21,541 19
JNBA01000019 21,283 27
JNBA01000038 19,559 17
JNBA01000008 18,961 25
JNBA01000026 18,876 35
JNBA01000025 16,875 19
JNBA01000031 16,604 15
JNBA01000035 13,885 15
JNBA01000041 13,778 19
JNBA01000040 12,936 15
JNBA01000034 12,391 15
JNBA01000004 10,731 15
JNBA01000045 8,467 18
JNBA01000044 8,352 12
JNBA01000051 8,240 12
JNBA01000052 6,131 7
JNBA01000049 5,556 7
JNBA01000046 3,510 4
JNBA01000047 2,545 1
JNBA01000048 2,072 3
JNBA01000043 1,634 2
JNBA01000050 1,149 1
JNBA01000053 1,035 2
Total 2,592,571 3,074
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760295.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760295.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760295.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760295.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760295.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760295.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760295.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760295.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760295.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760295.1/genes/interpro.txt (File format)

MicrobeBase