cyanobase » Prochlorococcus marinus str. SS2

Prochlorococcus marinus str. SS2

Summary

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Data source name GCA_000760255.1
Full name Prochlorococcus marinus str. SS2 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAY01000017 400,814 432
JNAY01000018 289,880 330
JNAY01000007 187,268 219
JNAY01000005 185,309 214
JNAY01000012 122,884 148
JNAY01000010 98,461 112
JNAY01000004 85,454 81
JNAY01000016 71,445 64
JNAY01000006 55,832 67
JNAY01000011 45,091 55
JNAY01000008 38,788 72
JNAY01000014 36,138 39
JNAY01000002 31,197 48
JNAY01000001 29,992 53
JNAY01000013 29,973 25
JNAY01000003 15,326 23
JNAY01000009 14,377 12
JNAY01000015 11,529 18
JNAY01000019 3,014 2
Total 1,752,772 2,014
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760255.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760255.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760255.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760255.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760255.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760255.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760255.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760255.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760255.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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