cyanobase » Prochlorococcus marinus str. PAC1

Prochlorococcus marinus str. PAC1

Summary

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Data source name GCA_000760235.1
Full name Prochlorococcus marinus str. PAC1 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAX01000015 588,843 691
JNAX01000010 284,217 328
JNAX01000011 182,484 179
JNAX01000005 177,946 201
JNAX01000004 132,687 154
JNAX01000014 129,713 152
JNAX01000012 125,753 143
JNAX01000007 40,018 51
JNAX01000003 33,748 69
JNAX01000001 32,549 55
JNAX01000013 31,233 72
JNAX01000002 30,478 73
JNAX01000009 13,013 33
JNAX01000006 12,532 27
JNAX01000008 10,279 22
JNAX01000019 5,583 6
JNAX01000017 4,631 6
JNAX01000016 2,585 4
JNAX01000018 1,747 3
JNAX01000020 1,124 1
Total 1,841,163 2,270
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760235.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760235.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760235.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760235.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760235.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760235.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760235.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760235.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760235.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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