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cyanobase » Prochlorococcus marinus str. PAC1

Prochlorococcus marinus str. PAC1

Summary

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Data source name GCA_000760235.1
Full name Prochlorococcus marinus str. PAC1
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAX01000015 588,843 691
JNAX01000010 284,217 328
JNAX01000011 182,484 179
JNAX01000005 177,946 201
JNAX01000004 132,687 154
JNAX01000014 129,713 152
JNAX01000012 125,753 143
JNAX01000007 40,018 51
JNAX01000003 33,748 69
JNAX01000001 32,549 55
JNAX01000013 31,233 72
JNAX01000002 30,478 73
JNAX01000009 13,013 33
JNAX01000006 12,532 27
JNAX01000008 10,279 22
JNAX01000019 5,583 6
JNAX01000017 4,631 6
JNAX01000016 2,585 4
JNAX01000018 1,747 3
JNAX01000020 1,124 1
Total 1,841,163 2,270
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760235.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760235.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760235.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760235.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760235.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760235.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760235.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760235.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760235.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760235.1/genes/interpro.txt (File format)

MicrobeBase