cyanobase » Prochlorococcus marinus str. LG

Prochlorococcus marinus str. LG

Summary

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Data source name GCA_000760155.1
Full name Prochlorococcus marinus str. LG
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAT01000011 353,379 383
JNAT01000010 351,377 403
JNAT01000004 326,623 360
JNAT01000007 174,770 194
JNAT01000003 163,400 187
JNAT01000009 143,959 161
JNAT01000008 71,424 69
JNAT01000005 40,124 72
JNAT01000001 31,791 48
JNAT01000013 29,578 50
JNAT01000014 21,928 24
JNAT01000002 20,106 16
JNAT01000006 15,331 23
JNAT01000012 10,273 9
Total 1,754,063 1,999
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2

Resources

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About species GCA_000760155.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760155.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760155.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760155.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760155.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760155.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760155.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760155.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760155.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760155.1/genes/interpro.txt (File format)

MicrobeBase