cyanobase » Prochlorococcus marinus str. LG

Prochlorococcus marinus str. LG

Summary

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Data source name GCA_000760155.1
Full name Prochlorococcus marinus str. LG External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAT01000011 353,379 383
JNAT01000010 351,377 403
JNAT01000004 326,623 360
JNAT01000007 174,770 194
JNAT01000003 163,400 187
JNAT01000009 143,959 161
JNAT01000008 71,424 69
JNAT01000005 40,124 72
JNAT01000001 31,791 48
JNAT01000013 29,578 50
JNAT01000014 21,928 24
JNAT01000002 20,106 16
JNAT01000006 15,331 23
JNAT01000012 10,273 9
Total 1,754,063 1,999
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760155.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760155.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760155.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760155.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760155.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760155.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760155.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760155.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760155.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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