in ?
cyanobase » Prochlorococcus marinus str. MIT 9401

Prochlorococcus marinus str. MIT 9401

Summary

? | +/- | Top
Data source name GCA_000760095.1
Full name Prochlorococcus marinus str. MIT 9401
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JNAR01000016 474,619 576
JNAR01000017 175,265 178
JNAR01000006 111,179 126
JNAR01000002 110,519 112
JNAR01000013 106,188 124
JNAR01000011 97,302 96
JNAR01000001 95,834 104
JNAR01000015 86,981 142
JNAR01000004 84,355 136
JNAR01000005 76,873 89
JNAR01000007 57,421 58
JNAR01000008 49,363 54
JNAR01000012 44,189 78
JNAR01000009 42,520 48
JNAR01000014 30,099 32
JNAR01000010 12,373 29
JNAR01000003 11,728 12
Total 1,666,808 1,994
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000760095.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760095.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760095.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760095.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760095.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760095.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760095.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760095.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760095.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760095.1/genes/interpro.txt (File format)

MicrobeBase