cyanobase » Prochlorococcus marinus str. MIT 9401

Prochlorococcus marinus str. MIT 9401

Summary

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Data source name GCA_000760095.1
Full name Prochlorococcus marinus str. MIT 9401 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAR01000016 474,619 576
JNAR01000017 175,265 178
JNAR01000006 111,179 126
JNAR01000002 110,519 112
JNAR01000013 106,188 124
JNAR01000011 97,302 96
JNAR01000001 95,834 104
JNAR01000015 86,981 142
JNAR01000004 84,355 136
JNAR01000005 76,873 89
JNAR01000007 57,421 58
JNAR01000008 49,363 54
JNAR01000012 44,189 78
JNAR01000009 42,520 48
JNAR01000014 30,099 32
JNAR01000010 12,373 29
JNAR01000003 11,728 12
Total 1,666,808 1,994
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760095.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760095.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760095.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760095.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760095.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760095.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760095.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760095.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760095.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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