cyanobase » Prochlorococcus marinus str. MIT 9314

Prochlorococcus marinus str. MIT 9314

Summary

? | +/- | Top
Data source name GCA_000760035.1
Full name Prochlorococcus marinus str. MIT 9314
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

? | +/- | Top
Chromosomes
Name Size (bp) Genes
JNAO01000013 393,049 486
JNAO01000012 241,658 248
JNAO01000008 221,824 281
JNAO01000004 145,316 209
JNAO01000010 134,177 149
JNAO01000001 120,892 125
JNAO01000002 111,110 134
JNAO01000011 100,654 127
JNAO01000006 77,491 89
JNAO01000007 41,689 44
JNAO01000009 37,930 45
JNAO01000003 32,662 39
JNAO01000005 23,438 30
JNAO01000015 4,585 3
JNAO01000016 2,919 2
JNAO01000014 1,162 1
Total 1,690,556 2,012
Features FeaturesView : 0 features

Genes

? | +/- | Top
List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

? | +/- | Top
BLAST2

Resources

? | +/- | Top
About species GCA_000760035.1 External
Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

? | +/- | Top
Genes File format:
Column Description or example
1 Data source name Synechocystis
2 ID slr1311
3 Chromosome name Chr
4 Start position 7229
5 End position 8311
6 Orientation + or -
7 Definition photosystem II D1 protein
Protein sequences /cyanobase/GCA_000760035.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences /cyanobase/GCA_000760035.1/genes.fna -- Nucleotide sequence in Fasta format.
Gene symbols /cyanobase/GCA_000760035.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760035.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
Column Description or example
1 Gene ID sll0084
2 Gene Deffinition putative phosphatase
3 First category ID A
4 First category name Amino acid biosynthesis
5 Second category ID A1
6 Second category name Aromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760035.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760035.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760035.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760035.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760035.1/genes/interpro.txt (File format)

MicrobeBase