cyanobase » Prochlorococcus marinus str. MIT 9314

Prochlorococcus marinus str. MIT 9314

Summary

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Data source name GCA_000760035.1
Full name Prochlorococcus marinus str. MIT 9314 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAO01000013 393,049 486
JNAO01000012 241,658 248
JNAO01000008 221,824 281
JNAO01000004 145,316 209
JNAO01000010 134,177 149
JNAO01000001 120,892 125
JNAO01000002 111,110 134
JNAO01000011 100,654 127
JNAO01000006 77,491 89
JNAO01000007 41,689 44
JNAO01000009 37,930 45
JNAO01000003 32,662 39
JNAO01000005 23,438 30
JNAO01000015 4,585 3
JNAO01000016 2,919 2
JNAO01000014 1,162 1
Total 1,690,556 2,012
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760035.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760035.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760035.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760035.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760035.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760035.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760035.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760035.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760035.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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