cyanobase » Prochlorococcus marinus str. MIT 9311

Prochlorococcus marinus str. MIT 9311

Summary

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Data source name GCA_000760015.1
Full name Prochlorococcus marinus str. MIT 9311 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAN01000013 395,981 488
JNAN01000012 201,311 219
JNAN01000007 194,962 234
JNAN01000005 189,094 242
JNAN01000009 147,191 179
JNAN01000001 124,608 139
JNAN01000003 105,479 129
JNAN01000011 81,208 70
JNAN01000006 80,132 93
JNAN01000010 44,612 49
JNAN01000004 43,745 54
JNAN01000014 37,132 35
JNAN01000015 26,966 29
JNAN01000002 24,172 30
JNAN01000008 12,023 16
JNAN01000017 1,295 1
JNAN01000016 1,153 1
Total 1,711,064 2,008
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000760015.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000760015.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000760015.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000760015.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000760015.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000760015.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000760015.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000760015.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000760015.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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