cyanobase » Prochlorococcus marinus str. MIT 9302

Prochlorococcus marinus str. MIT 9302

Summary

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Data source name GCA_000759975.1
Full name Prochlorococcus marinus str. MIT 9302 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAM01000011 383,692 473
JNAM01000010 339,761 399
JNAM01000005 242,124 292
JNAM01000006 201,598 204
JNAM01000002 127,413 139
JNAM01000014 98,044 117
JNAM01000007 86,661 91
JNAM01000001 54,524 79
JNAM01000012 50,810 49
JNAM01000008 47,046 59
JNAM01000004 37,121 34
JNAM01000009 30,896 29
JNAM01000003 25,766 46
JNAM01000013 11,383 17
JNAM01000016 5,673 6
JNAM01000017 1,676 1
JNAM01000015 1,155 1
Total 1,745,343 2,036
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000759975.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000759975.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000759975.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759975.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759975.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759975.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759975.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759975.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759975.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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