cyanobase » Prochlorococcus marinus str. MIT 9201

Prochlorococcus marinus str. MIT 9201

Summary

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Data source name GCA_000759955.1
Full name Prochlorococcus marinus str. MIT 9201 External
Taxonomy Lineage Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.

Genome Information

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Chromosomes
Name Size (bp) Genes
JNAL01000018 299,563 337
JNAL01000007 214,646 271
JNAL01000010 181,542 210
JNAL01000005 145,955 180
JNAL01000017 126,665 117
JNAL01000012 112,850 145
JNAL01000015 98,017 104
JNAL01000014 95,286 112
JNAL01000016 88,908 89
JNAL01000009 61,811 101
JNAL01000002 56,069 62
JNAL01000011 53,588 70
JNAL01000004 34,157 42
JNAL01000006 31,740 57
JNAL01000013 16,212 30
JNAL01000003 13,793 19
JNAL01000008 12,980 33
JNAL01000001 10,944 5
JNAL01000019 9,996 7
JNAL01000020 4,803 9
JNAL01000021 2,891 2
Total 1,672,416 2,002
Features FeaturesView : 0 features

Genes

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List GenesView csv txt FAA
Geneset GenesetView
Function category GeneCategoryView csv txt
Annotation Gene Annotation WordCloudView

Tools and analysis

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BLAST2
KazusaMart Dataset GCA_000759955.1

Genome-scale data

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Curated mutant information Genes and Mutants - as known as CyanoGenes/Mutants
Proteome
Interactome
Transcriptome
Bibliome References from Kazusa GeneIndexing articles External

Bibliography

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References
Gene Indexing Kazusa GeneIndexing articles External Feed-icon

Resources

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Data dowonload Distribution of Sequence and Annotated Data Files (FTP) External
Sequence data INSDB DNA DataBank FlatFiles External
Social genome annotation
DAS service
NCBI Taxonomy Taxonomy ID: External
KEGG GENOME External
UniProt taxonomy: in UniProt External

API

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Genomes Chromosomes/Plasmids
Genes File format:
ColumnDescription or example
1Data source nameSynechocystis
2IDslr1311
3Chromosome nameChr
4Start position7229
5End position8311
6Orientation+ or -
7Definitionphotosystem II D1 protein
Protein sequences /cyanobase/GCA_000759955.1/genes.faa -- AminoAcids sequence in Fasta format.
Nucleotide sequences
Gene symbols /cyanobase/GCA_000759955.1/genes/search/dsn/gene_symbol.txt (File format)
GeneIndex gnames /cyanobase/GCA_000759955.1/genes/search/dsn/gi_gname.txt (File format)
Gene function category File format:
ColumnDescription or example
1Gene IDsll0084
2Gene Deffinitionputative phosphatase
3First category IDA
4First category nameAmino acid biosynthesis
5Second category IDA1
6Second category nameAromatic amino acid family
Gene annotation word clouds /cyanobase/GCA_000759955.1/genes/word_cloud.txt -- tab delimitered text format.
File format:
ColumnDescription or example
1Word
2CountInteger
/cyanobase/GCA_000759955.1/genes/word_cloud?style=plain -- Plain view in html
/cyanobase/GCA_000759955.1/genes/word_cloud?c=10 -- 10 counts cut-off in html.
GO Terms by ipr2go /api/cyanobase/GCA_000759955.1/genes/goterm.txt (File format)
InterProScan matches /api/cyanobase/GCA_000759955.1/genes/interpro.txt (File format)

Kazusa DNA Research Institute

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